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[189107_at] protein kinase

Description B0511.4 /REP_DB=WormBase Gene ID /WP=CE17343 /TR=O61821 /GB=AAC17652.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 88      4grp_total > 51      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 8.2
(-2.7)
A 		31
(3)
A 		7.1
(-3)
A 		16.2
(-0.7)
A 		24
B 24.8
(3)
A 		7.1
(-2.9)
A 		24.8
(3)
A 		6.9
(-3)
A 		18
C 22.7
(-0.1)
A 		39
(3)
A 		24.8
(0.3)
A 		7.3
(-3)
A 		32
avr 18.6
(0.3) 		25.7
(3) 		18.9
(0.4) 		10.1
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 7.4
(-3)
A 		29.4
(-1.2)
A 		35.7
(-0.7)
A 		36
(-0.6)
A 		61.9
(1.5)
P 		79.8
(3)
A 		72
B 5.6
(-3)
A 		34
(-0.5)
A 		29.6
(-0.9)
A 		18.1
(-1.9)
A 		65.5
(2.2)
P 		74.1
(3)
P 		69
C 31.9
(-1.3)
A 		29
(-1.5)
A 		28.6
(-1.5)
A 		8.6
(-3)
A 		33.5
(-1.2)
P 		91.2
(3)
P 		83
avr 15
(-3) 		30.8
(-1.6) 		31.3
(-1.5) 		20.9
(-2.5) 		53.6
(0.5) 		81.7
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3
(-1.6)
A 		6.7
(3)
A 		1.9
(-3)
A 		2.4
(-2.4)
A 		5
B 7.9
(3)
A 		1.7
(-2.8)
A 		5.7
(0.9)
A 		1.5
(-3)
A 		6
C 7.5
(0.8)
A 		11.2
(3)
A 		8.6
(1.4)
A 		1.2
(-3)
A 		10
avr 6.1
(2.5) 		6.5
(3) 		5.4
(1.6) 		1.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 1.4
(-3)
A 		10.5
(0)
A 		7.8
(-0.9)
A 		9.1
(-0.4)
A 		18.7
(2.8)
P 		19.4
(3)
A 		18
B 1.9
(-3)
A 		11.3
(-0.8)
A 		7.2
(-1.8)
A 		4.8
(-2.3)
A 		26.6
(2.8)
P 		27.6
(3)
P 		26
C 11.8
(-0.9)
A 		8.8
(-1.5)
A 		7.3
(-1.8)
A 		1.7
(-3)
A 		10.8
(-1.1)
P 		30.5
(3)
P 		29
avr 5
(-3) 		10.2
(-1.5) 		7.4
(-2.3) 		5.2
(-2.9) 		18.7
(1) 		25.8
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189107_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1172
Sequence Type Exemplar sequence
Representative Public ID B0511.4 NCBI
Target Description B0511.4 /REP_DB=WormBase Gene ID /WP=CE17343 /TR=O61821 /GB=AAC17652.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060385 NCBI Caenorhabditis elegans B0511.4 (B0511.4) mRNA, complete cds. 11/11 None
SNAP00000031161 ENSEMBL cdna:SNAP chromosome:CEL140:I:10652504:10653693:1 11/11 None
GENEFINDER00000031179 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10652504:10653693:1 9/11 None
B0511.4 ENSEMBL cdna:known chromosome:CEL140:I:10652405:10653693:1 gene:B0511.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10652335-10653624(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein kinase
Gene Symbol tag-344
Ensembl B0511.4
Entrez Gene 182017 Entrez gene
SwissProt O61821 EMBL-EBI
WormBase CE17343 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584770_AT similar to serine/threonine kinase 22B (spermiogenesis associated) (predicted) cfa
CANINE_2:CFA.8526.1.A1_AT similar to serine/threonine kinase 22B (spermiogenesis associated) (predicted) cfa
CANINE_2:CFA.8526.1.A1_S_AT similar to serine/threonine kinase 22B (spermiogenesis associated) (predicted) cfa
CANINE_2:CFAAFFX.22803.1.S1_S_AT similar to serine/threonine kinase 22B (spermiogenesis associated) (predicted) cfa
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17652 Temporarily assigned gene name protein 344 [Caenorhabditis elegans] ref|NP_492786.1| B0511.4 [Caenorhabditis elegans] 0.0
blast CAE66819 Hypothetical protein CBG12184 [Caenorhabditis briggsae] 1.0E-163
blast CAA16343 Hypothetical protein Y38H8A.4 [Caenorhabditis elegans] ref|NP_502595.1| Y38H8A.4 [Caenorhabditis elegans] 1.0E-158
blast CAE66819 Hypothetical protein CBG12184 [Caenorhabditis briggsae] 1.0E-157
blast CAE66819 Hypothetical protein CBG12184 [Caenorhabditis briggsae] 1.0E-154
Protein Families
Method ID Description E-Value
hanks 2.2.11 CaMK Group; CaMK II KIN1/SNF1/Nim1; YKL453 3.0E-64
hanks 2.2.11 CaMK Group; CaMK II KIN1/SNF1/Nim1; YKL453 2.0E-69
hanks 2.2.4 CaMK Group; CaMK II KIN1/SNF1/Nim1; p78 8.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.8E-71
Pfam IPR000719 EMBL-EBI Protein kinase 3.3E-70
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-62
Sequence
Target Sequence 
>C. ELEGANS:189107_AT
atttcgtcaacttattgcagcacttactcatctgcaatcctataacattgtgcatcggga
tctcaaatgcgaaaatatctttatggataaacatggaaatgtgaagctcggcgacttcgg
attctcgagaattctgaaaccgggtgaaaaatctggaacattctgtggatcgcgagcata
tgtggctccagaaatttttcgtggcagagaatattctggaaatgcagttgacgtatggag
tactggggtcattctctacataatgctggctggatcaatgccatttgatgatcgtgaccc
aaggaaaatgatcgagagacagttggcacataaaattaaattcccgaaaagttgcacatc
atcggtcttttcgaaggctctggtccttgagattctccagccacatgcaccgaaccgtcc
gacctacaaagcaatttgtgaatctgaatggctccgtactcaaccgtactacatgaaacc
caatgagccaccaaaagtattggcaactcgaattgtgtcacctgcaactccgattgttcc
tgtctcaggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCGTCAACTTATTGCAGCACTT 458 17 534 Antisense
CAGCACTTACTCATCTGCAATCCTA 112 203 551 Antisense
TGTGAAGCTCGGCGACTTCGGATTC 380 553 633 Antisense
GAACATTCTGTGGATCGCGAGCATA 96 351 689 Antisense
GAGTACTGGGGTCATTCTCTACATA 325 399 771 Antisense
GTTGCACATCATCGGTCTTTTCGAA 389 439 884 Antisense
TCTTTTCGAAGGCTCTGGTCCTTGA 548 613 899 Antisense
CTGGTCCTTGAGATTCTCCAGCCAC 512 239 913 Antisense
GAATCTGAATGGCTCCGTACTCAAC 478 327 973 Antisense
GGCAACTCGAATTGTGTCACCTGCA 703 533 1035 Antisense
ACTCCGATTGTTCCTGTCTCAGGAA 278 99 1060 Antisense
Sequence Source Affymetrix Proprietary Database