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[189106_at] dehydrogenase

Description T01G6.10 /REP_DB=WormBase Gene ID /WP=CE13008 /TR=O16971 /GB=AAG24180.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_total > 09      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 1.8
(-3)
A 		11.6
(2.5)
A 		3.9
(-1.8)
A 		12.4
(3)
A 		11
B 19.5
(-0.6)
A 		1.8
(-3)
A 		3.8
(-2.7)
A 		46.1
(3)
A 		44
C 6.4
(-2.4)
A 		41.2
(1.9)
A 		1.5
(-3)
A 		50.5
(3)
A 		49
avr 9.2
(-1.9) 		18.2
(-0.3) 		3.1
(-3) 		36.3
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 30.6
(3)
A 		1.6
(-3)
A 		4
(-2.5)
A 		10.9
(-1.1)
A 		2.9
(-2.7)
A 		7.7
(-1.7)
A 		29
B 26.8
(3)
A 		3.8
(-2.4)
A 		21.6
(1.8)
A 		2.7
(-2.7)
A 		4.7
(-2.2)
A 		1.3
(-3)
A 		26
C 12.8
(3)
A 		5.1
(-1.4)
A 		5.1
(-1.4)
A 		2.3
(-3)
A 		3.6
(-2.3)
A 		3.4
(-2.4)
A 		11
avr 23.4
(3) 		3.5
(-3) 		10.2
(-1) 		5.3
(-2.5) 		3.7
(-2.9) 		4.1
(-2.8) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.7
(-3)
A 		2.5
(3)
A 		1
(-2)
A 		1.8
(0.7)
A 		2
B 6.2
(0.7)
A 		0.4
(-3)
A 		0.9
(-2.7)
A 		9.8
(3)
A 		9
C 2.1
(-2.2)
A 		11.8
(3)
A 		0.5
(-3)
A 		8.5
(1.2)
A 		11
avr 3
(-0.8) 		4.9
(1.2) 		0.8
(-3) 		6.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5.6
(3)
A 		0.6
(-3)
A 		0.9
(-2.6)
A 		2.8
(-0.4)
A 		0.9
(-2.6)
A 		1.9
(-1.4)
A 		5
B 9.3
(3)
A 		1.3
(-2.5)
A 		5.2
(0.2)
A 		0.7
(-2.9)
A 		1.9
(-2)
A 		0.5
(-3)
A 		9
C 4.8
(3)
A 		1.6
(-1.5)
A 		1.3
(-1.9)
A 		0.5
(-3)
A 		1.2
(-2)
A 		1.1
(-2.2)
A 		4
avr 6.6
(3) 		1.2
(-3) 		2.5
(-1.6) 		1.3
(-2.9) 		1.3
(-2.9) 		1.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14957
Sequence Type Exemplar sequence
Representative Public ID T01G6.10 NCBI
Target Description T01G6.10 /REP_DB=WormBase Gene ID /WP=CE13008 /TR=O16971 /GB=AAG24180.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070823 NCBI Caenorhabditis elegans T01G6.10 (dehydrogenase) mRNA, complete cds. 11/11 None
SNAP00000004004 ENSEMBL cdna:SNAP chromosome:CEL140:V:501347:503052:-1 11/11 None
T01G6.10 ENSEMBL cdna:known chromosome:CEL140:V:501971:503052:-1 gene:T01G6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:501970-503052(-) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Ensembl T01G6.10
Entrez Gene 187966 Entrez gene
SwissProt O16971 EMBL-EBI
WormBase CE35607 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24180 Hypothetical protein T01G6.10 [Caenorhabditis elegans] ref|NP_503224.2| T01G6.10 [Caenorhabditis elegans] 1.0E-131
blast AAG24180 Hypothetical protein T01G6.10 [Caenorhabditis elegans] ref|NP_503224.2| T01G6.10 [Caenorhabditis elegans] 1.0E-124
blast AAG24176 Hypothetical protein T01G6.1 [Caenorhabditis elegans] ref|NP_503222.1| T01G6.1 [Caenorhabditis elegans] 3.0E-99
blast AAG24176 Hypothetical protein T01G6.1 [Caenorhabditis elegans] ref|NP_503222.1| T01G6.1 [Caenorhabditis elegans] 9.0E-97
blast CAE74569 Hypothetical protein CBG22333 [Caenorhabditis briggsae] 3.0E-88
blast CAE74569 Hypothetical protein CBG22333 [Caenorhabditis briggsae] 4.0E-86
Protein Domains
Database ID Description E-Value
scop a.4.1.Tetracyclin repressor-like, N-terminal domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain 3.5
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 9.7E-61
Sequence
Target Sequence 
>C. ELEGANS:189106_AT
gagaatgtgtgtgttgtcgtggcgaacttgacggattctgatgggcaagacgagattgtg
caatcggcgctcgatgcttttgggaggattgatgtactggtgaacaacgccggtgccaat
gtggtcgacggtacctttaacactgatcaatctaccgagctgtaccataaaacatttcaa
atcaattttgaagccgtcatcgagatggtgaaaaaaaccaaaaatcacctgatcgaatcg
aaaggtgaaattgtgaatgtctccagtgtagctgcaggaccacaggcgcttgctccatcc
ccctattacgcagcctccaaagccgccctagaccaatacacacgttgcgtggcacttgat
ctcatcttgcaagggatcgaagagaacttcacttctaacagagcctgcattcctgcagga
gtttgcggaaagcctgaggacatcgccgagcttattatttttttggcggatcgcaagaga
tcttcttacataataggacagtcgattgtggccgatggaggaacttctttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAATGTGTGTGTTGTCGTGGCGA 407 391 184 Antisense
GTCGTGGCGAACTTGACGGATTCTG 359 473 199 Antisense
GGCGCTCGATGCTTTTGGGAGGATT 688 541 249 Antisense
GTCGACGGTACCTTTAACACTGATC 660 473 307 Antisense
GATCAATCTACCGAGCTGTACCATA 534 421 328 Antisense
GTCTCCAGTGTAGCTGCAGGACCAC 509 469 442 Antisense
CCCTAGACCAATACACACGTTGCGT 111 259 509 Antisense
GTGGCACTTGATCTCATCTTGCAAG 320 491 532 Antisense
GAACTTCACTTCTAACAGAGCCTGC 574 349 567 Antisense
AAAGCCTGAGGACATCGCCGAGCTT 480 125 612 Antisense
TGTGGCCGATGGAGGAACTTCTTTG 308 553 690 Antisense
Sequence Source Affymetrix Proprietary Database