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[189105_s_at] Casein kinase

Description C56C10.6 /REP_DB=WormBase Gene ID /WP=CE02571 /TR=Q18882 /GB=AAA68774.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Casein kinase
Cluster 6grp_total > 79      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 29.2
(-0.2)
A 		21.1
(-1.2)
A 		54.7
(3)
A 		6.4
(-3)
A 		48
B 52
(3)
A 		6
(-3)
A 		10.3
(-2.4)
A 		36.7
(1)
A 		46
C 51.3
(1.9)
A 		60.7
(3)
A 		9.6
(-3)
A 		54.7
(2.3)
A 		51
avr 44.2
(3) 		29.3
(-1.6) 		24.9
(-3) 		32.6
(-0.6) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 6.3
(-3)
A 		56.5
(1.5)
A 		12.2
(-2.5)
A 		6.9
(-2.9)
A 		73.3
(3)
A 		48.9
(0.8)
A 		67
B 22.7
(-1)
A 		35.8
(0.4)
A 		7.6
(-2.7)
A 		5.3
(-3)
A 		21.5
(-1.2)
A 		58.4
(3)
A 		53
C 43.3
(3)
A 		10.4
(-2)
A 		43.5
(3)
A 		7.1
(-2.5)
A 		4.1
(-3)
A 		36.6
(1.9)
A 		39
avr 24.1
(-0.4) 		34.2
(1) 		21.1
(-0.9) 		6.4
(-3) 		33
(0.8) 		48
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.6
(1.3)
A 		4.6
(-1.3)
A 		14.3
(3)
A 		0.9
(-3)
A 		13
B 16.6
(3)
A 		1.5
(-3)
A 		2.4
(-2.6)
A 		7.8
(-0.5)
A 		15
C 17
(2.8)
A 		17.4
(3)
A 		3.4
(-3)
A 		9.2
(-0.5)
A 		14
avr 14.7
(3) 		7.8
(-1.8) 		6.7
(-2.5) 		6
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.2
(-3)
A 		20.1
(2.4)
A 		2.7
(-2.6)
A 		1.8
(-2.8)
A 		22.1
(3)
A 		11.9
(0.1)
A 		21
B 7.9
(-1.1)
A 		11.9
(0.1)
A 		1.8
(-2.9)
A 		1.4
(-3)
A 		8.7
(-0.9)
A 		21.8
(3)
A 		20
C 16.1
(3)
A 		3.2
(-2.2)
A 		11.1
(1)
A 		1.4
(-3)
A 		1.3
(-3)
A 		12.2
(1.4)
A 		15
avr 8.4
(0) 		11.7
(1.4) 		5.2
(-1.4) 		1.5
(-3) 		10.7
(1) 		15.3
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189105_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5555
Sequence Type Exemplar sequence
Representative Public ID C56C10.6 NCBI
Target Description C56C10.6 /REP_DB=WormBase Gene ID /WP=CE02571 /TR=Q18882 /GB=AAA68774.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Casein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062932(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062932 NCBI Caenorhabditis elegans C56C10.6 (C56C10.6) mRNA, complete cds. 11/11 A 
SNAP00000022061 ENSEMBL cdna:SNAP chromosome:CEL140:II:6579647:6581206:-1 11/11 None
GENEFINDER00000022086 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6579647:6582917:-1 11/11 None
C56C10.6 ENSEMBL cdna:known chromosome:CEL140:II:6579647:6581256:-1 gene:C56C10.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6627424-6629198(+) 96.12 96.12
chrII:6579643-6581181(-) 100.0 100.0
Public Domain and Genome References
Gene Title Casein kinase
Ensembl C56C10.6
Entrez Gene 174087 Entrez gene
SwissProt Q18882 EMBL-EBI
WormBase CE29490 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68774 Hypothetical protein C56C10.6 [Caenorhabditis elegans] ref|NP_495333.1| C56C10.6 [Caenorhabditis elegans] 0.0
blast AAB38092 Hypothetical protein F54H5.2 [Caenorhabditis elegans] ref|NP_495347.1| F54H5.2 [Caenorhabditis elegans] 0.0
blast CAE65958 Hypothetical protein CBG11140 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 5.6E-18
Pfam IPR000719 EMBL-EBI Protein kinase 5.6E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022086 1 29-51
Sequence
Target Sequence 
>C. ELEGANS:189105_S_AT
ggagcatggtgtatctgctcgctgagctccgtggacctcttccatggtcttcgcaaagtg
ataagcgagtcgttggagagatgaaaagactacattccgatgaagtcgttcttcaaaata
gtccgatggagttcttagagattgccaagtacttgagaagtcttacatacttccaccgcc
cggattaccacaaaattttcatgcttctcatttcggtcatgagtaaaggaaaatttgcat
ggaatgatccatttgattgggaaatgcctatctccacaacaccatcaaaatcaacaccat
ctaaatcagttacaaagtcgccagcccaattgagtaaggaaacagtcaaaaaagcaagta
gagagaagacattgagtaaggagaagacgagcaaagaagacattaagacggcacggaaaa
cgagtattgagaaggatgttaaggagaagctgagtaaggacatggcgagcaaggagaaaa
tcagtctctcggctgagaaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCATGGTGTATCTGCTCGCTGA 312 521 695 Antisense
CTCTTCCATGGTCTTCGCAAAGTGA 85 231 731 Antisense
CTCCACAACACCATCAAAATCAACA 229 237 966 Antisense
ACACCATCAAAATCAACACCATCTA 581 109 973 Antisense
ATCAACACCATCTAAATCAGTTACA 410 27 984 Antisense
AAATCAGTTACAAAGTCGCCAGCCC 475 117 997 Antisense
AAGTCGCCAGCCCAATTGAGTAAGG 177 157 1009 Antisense
GACGGCACGGAAAACGAGTATTGAG 156 375 1101 Antisense
GAGAAGCTGAGTAAGGACATGGCGA 533 391 1138 Antisense
GGAGAAAATCAGTCTCTCGGCTGAG 207 519 1167 Antisense
AATCAGTCTCTCGGCTGAGAAAATT 251 171 1173 Antisense
Sequence Source Affymetrix Proprietary Database