[Home] | [Total List]

[189103_at]

Description F29C4.1 /REP_DB=WormBase Gene ID /WP=CE17719 /GEN=daf-1 /GB=AAC19189.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 03      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 70      6grp_total > 34      4grp_total > 37      6grp_highest_sub > De      6grp_cgc > 34      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 406.7
(3)
P 		321.6
(-0.2)
P 		246.6
(-3)
P 		252.3
(-2.8)
P 		160
B 368.7
(3)
P 		301.9
(0.6)
P 		204.7
(-3)
P 		360.4
(2.7)
P 		164
C 367.9
(3)
P 		321.7
(1)
P 		229.6
(-3)
P 		275.9
(-1)
P 		138
avr 381.1
(3) 		315.1
(0.4) 		227
(-3) 		296.2
(-0.3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 374.2
(3)
P 		354.3
(2.3)
P 		313.6
(0.8)
P 		218.8
(-2.7)
P 		213.5
(-2.9)
P 		211.7
(-3)
P 		163
B 369.2
(1.3)
P 		431.4
(3)
P 		400.2
(2.2)
P 		253.3
(-1.8)
P 		210.8
(-3)
P 		245.8
(-2)
P 		221
C 325.1
(1.2)
P 		376.8
(3)
P 		335.2
(1.6)
P 		206.3
(-2.9)
P 		202.4
(-3)
P 		236.1
(-1.8)
P 		174
avr 356.2
(1.9) 		387.5
(3) 		349.7
(1.7) 		226.1
(-2.4) 		208.9
(-3) 		231.2
(-2.3) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 148.1
(3)
P 		69.8
(-1.2)
P 		64.5
(-1.5)
P 		36.9
(-3)
P 		111
B 117.6
(3)
P 		74.6
(-0.7)
P 		47.4
(-3)
P 		76.8
(-0.5)
P 		70
C 121.8
(3)
P 		92.5
(0.7)
P 		80
(-0.3)
P 		46.5
(-3)
P 		75
avr 129.2
(3) 		79
(-1) 		64
(-2.2) 		53.4
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 69
(-1.6)
P 		126
(3)
P 		68.3
(-1.7)
P 		55.5
(-2.7)
P 		64.4
(-2)
P 		51.6
(-3)
P 		74
B 128.5
(1.8)
P 		143.6
(3)
P 		97.2
(-0.6)
P 		67.1
(-3)
P 		85.7
(-1.5)
P 		91.7
(-1.1)
P 		77
C 120.5
(3)
P 		115
(2.6)
P 		85.3
(0.3)
P 		41.5
(-3)
P 		65.5
(-1.2)
P 		79
(-0.2)
P 		79
avr 106
(1.2) 		128.2
(3) 		83.6
(-0.6) 		54.7
(-3) 		71.9
(-1.6) 		74.1
(-1.4) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189103_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10732
Sequence Type Exemplar sequence
Representative Public ID F29C4.1 NCBI
Target Description F29C4.1 /REP_DB=WormBase Gene ID /WP=CE17719 /GEN=daf-1 /GB=AAC19189.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027988(11), NM_001027989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027988 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-1) (daf-1) mRNA, complete cds. 11/11 None
NM_001027989 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-1) (daf-1) mRNA, complete cds. 11/11 None
SNAP00000028013 ENSEMBL cdna:SNAP chromosome:CEL140:IV:133411:137621:1 11/11 None
GENEFINDER00000028016 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:132451:137621:1 11/11 None
F29C4.1a ENSEMBL cdna:known chromosome:CEL140:IV:132416:138291:1 gene:F29C4.1 11/11 A 
F29C4.1b ENSEMBL cdna:known chromosome:CEL140:IV:132451:137621:1 gene:F29C4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:132450-137621(+) 100.0 100.0
Public Domain and Genome References
Ensembl F29C4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP82657 Abnormal dauer formation protein 1, isoform a [Caenorhabditis elegans] ref|NP_001023159.1| abnormal DAuer Formation family member (daf-1) [Caenorhabditis elegans] sp|P20792|DAF1_CAEEL Cell-surface receptor daf-1 precursor (Abnormal dauer formation protein 1) gb|AAA28001.1| serine/threonine protein kinase (daf-1) precursor 0.0
blast AAC19189 Abnormal dauer formation protein 1, isoform b [Caenorhabditis elegans] ref|NP_001023160.1| abnormal DAuer Formation family member (daf-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-36
Pfam IPR000719 EMBL-EBI Protein kinase 2.2E-33
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023159.1 1 170-192
NP_001023160.1 1 170-192
F29C4.1a 1 170-192
F29C4.1b 1 170-192
SNAP00000028013 1 162-184
GENEFINDER00000028016 1 170-192
Sequence
Target Sequence 
>C. ELEGANS:189103_AT
agataccttgcaccggaaatcctgaacagtacgatgcagttcaccgtcttcgagagctac
caatgtgccgatgtctactcattttctctagtcatgtgggaaaccctatgcagatgtgaa
gatggagatgttctgccgagagaagcggccacagtgatcccatatattgagtggaccgat
cgggatccacaagacgctcagatgtttgatgtggtttgcacgcggaggctcagacctaca
gagaatcctctgtggaaggatcatccggaaatgaaacacattatggagattatcaaaacg
tgctggaatggcaatccgagcgcccgtttcacctcctatatttgccgcaaacgaatggat
gaacggcagcaactgttgctggacaagaaggcaaaagctgtggcccagacggcaggggtg
acagttcaggatcggaagattttgggtccccagaaaccgaaagacgagtcaccggcaaat
ggtgctccgcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATACCTTGCACCGGAAATCCTGA 70 67 1414 Antisense
CAGTACGATGCAGTTCACCGTCTTC 480 207 1440 Antisense
AGCTACCAATGTGCCGATGTCTACT 610 79 1468 Antisense
GATGTCTACTCATTTTCTCTAGTCA 487 409 1483 Antisense
AAGCGGCCACAGTGATCCCATATAT 212 149 1556 Antisense
GGACCGATCGGGATCCACAAGACGC 555 521 1586 Antisense
TGATGTGGTTTGCACGCGGAGGCTC 338 567 1620 Antisense
CGTGCTGGAATGGCAATCCGAGCGC 568 245 1712 Antisense
TGTGGCCCAGACGGCAGGGGTGACA 395 555 1812 Antisense
GGATCGGAAGATTTTGGGTCCCCAG 210 507 1842 Antisense
TCACCGGCAAATGGTGCTCCGCGGA 697 625 1882 Antisense
Sequence Source Affymetrix Proprietary Database