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[189100_at] lectin (C-type)

Description ZK896.6 /REP_DB=WormBase Gene ID /WP=CE15459 /TR=Q9XUA7 /GB=CAB05321.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=lectin (C-type)
Cluster 6grp_high1_10_10 > 51      6grp_total > 62      4grp_total > 59      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 542
1 2 3 4 range
A 344.1
(0.8)
P 		544.4
(3)
P 		542.1
(3)
P 		5.6
(-3)
A 		539
B 344.7
(1.1)
P 		434
(2.2)
P 		502
(3)
P 		2.9
(-3)
A 		499
C 404.8
(1.7)
P 		511.9
(3)
P 		512.1
(3)
P 		7.6
(-3)
A 		505
avr 364.5
(1.2) 		496.8
(2.7) 		518.7
(3) 		5.4
(-3) 		513

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 215.4
(-1.1)
P 		342.7
(1.8)
P 		396.2
(3)
P 		325.6
(1.4)
P 		247.7
(-0.3)
P 		129.1
(-3)
M 		267
B 190.3
(-1.9)
P 		258.8
(-0.7)
P 		482.3
(3)
P 		390.6
(1.5)
P 		270.3
(-0.5)
P 		123.1
(-3)
P 		359
C 216.4
(-1.5)
P 		310.4
(0.1)
P 		483.4
(3)
P 		347.8
(0.7)
P 		261.9
(-0.8)
P 		130.6
(-3)
P 		353
avr 207.4
(-1.5) 		304
(0.2) 		454
(3) 		354.7
(1.2) 		260
(-0.6) 		127.6
(-3) 		326
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 125.3
(2.3)
P 		118.2
(2)
P 		141.7
(3)
P 		0.8
(-3)
A 		141
B 109.9
(2.7)
P 		107.2
(2.5)
P 		116.3
(3)
P 		0.6
(-3)
A 		116
C 134
(1.5)
P 		147.2
(1.9)
P 		178.5
(3)
P 		1.3
(-3)
A 		177
avr 123.1
(2.1) 		124.2
(2.1) 		145.5
(3) 		0.9
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 39.7
(-2.4)
P 		121.9
(3)
P 		86.3
(0.6)
P 		82.6
(0.4)
P 		74.7
(-0.1)
P 		31.4
(-3)
M 		91
B 66.2
(-1.3)
P 		86.1
(0.4)
P 		117.1
(3)
P 		103.4
(1.8)
P 		109.8
(2.4)
P 		45.9
(-3)
P 		71
C 80.2
(-0.2)
P 		94.7
(0.9)
P 		123
(3)
P 		69.9
(-1)
P 		84.7
(0.1)
P 		43.7
(-3)
P 		79
avr 62
(-1.1) 		100.9
(2.3) 		108.8
(3) 		85.3
(0.9) 		89.7
(1.3) 		40.3
(-3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9759
Sequence Type Exemplar sequence
Representative Public ID ZK896.6 NCBI
Target Description ZK896.6 /REP_DB=WormBase Gene ID /WP=CE15459 /TR=Q9XUA7 /GB=CAB05321.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=lectin (C-type)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070050 NCBI Caenorhabditis elegans ZK896.6 (ZK896.6) mRNA, complete cds. 11/11 None
SNAP00000024385 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12869326:12871450:-1 11/11 None
GENEFINDER00000024393 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12869138:12871450:-1 11/11 None
ZK896.6 ENSEMBL cdna:known chromosome:CEL140:IV:12869326:12871450:-1 gene:ZK896.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12869331-12871456(-) 100.0 100.0
Public Domain and Genome References
Gene Title lectin (C-type)
Ensembl ZK896.6
Entrez Gene 191451 Entrez gene
SwissProt Q9XUA7 EMBL-EBI
WormBase CE15459 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05321 Hypothetical protein ZK896.6 [Caenorhabditis elegans] ref|NP_502451.1| ZK896.6 [Caenorhabditis elegans] 1.0E-167
blast CAB05321 Hypothetical protein ZK896.6 [Caenorhabditis elegans] ref|NP_502451.1| ZK896.6 [Caenorhabditis elegans] 1.0E-165
blast CAE56620 Hypothetical protein CBG24376 [Caenorhabditis briggsae] 1.0E-126
blast CAE56620 Hypothetical protein CBG24376 [Caenorhabditis briggsae] 1.0E-124
blast XP_782283 PREDICTED: similar to Macrophage mannose receptor 1 precursor (MMR) [Strongylocentrotus purpuratus] 3.0E-16
blast CAB05324 Hypothetical protein ZK896.7 [Caenorhabditis elegans] ref|NP_502450.1| ZK896.7 [Caenorhabditis elegans] 5.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.2E-6
Pfam IPR001304 EMBL-EBI C-type lectin 1.1E-6
Sequence
Target Sequence 
>C. ELEGANS:189100_AT
gatgcgagcacgtctacttacaagaactgggctccaggatacccattcagtggatatgac
tacgttggagcacaattgtccaacgccaaatgggttactgtaagatcgtcgctgatgctc
ccgttcatttgctattaccaaaaagggcacaacaggaatcaactgacaacaccagcgcca
agtcaaaatcccggaggaatatgcaccggagctgaacttctattggagcacaggtgttac
tccttcatcccgaccctacttccgtacgcggctgctaaacaaaaatgcgaatcaatcgga
aaaacattggcaatttttgacgatcaaatgcaaatcaattttgtgacatctgtctccgtc
tcaaaattctccatgaactacggctctttctgggtcggtctcacgaagaataccgctgat
aacacgttccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCGAGCACGTCTACTTACAAGA 294 415 313 Antisense
GAACTGGGCTCCAGGATACCCATTC 148 321 336 Antisense
ACTGTAAGATCGTCGCTGATGCTCC 244 97 409 Antisense
CAGCGCCAAGTCAAAATCCCGGAGG 251 201 485 Antisense
ATGCACCGGAGCTGAACTTCTATTG 627 43 513 Antisense
GGAGCACAGGTGTTACTCCTTCATC 317 519 537 Antisense
TACTTCCGTACGCGGCTGCTAAACA 44 621 569 Antisense
GACATCTGTCTCCGTCTCAAAATTC 650 369 657 Antisense
AAATTCTCCATGAACTACGGCTCTT 51 117 676 Antisense
TCTTTCTGGGTCGGTCTCACGAAGA 705 615 697 Antisense
AATACCGCTGATAACACGTTCCACT 587 171 721 Antisense
Sequence Source Affymetrix Proprietary Database