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[189096_at] protein kinase

Description W03G9.5 /REP_DB=WormBase Gene ID /WP=CE14562 /TR=O44751 /GB=AAB96740.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 49      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 4
(-3)
A 		3.8
(-3)
A 		7.8
(-2.3)
A 		37.4
(3)
A 		34
B 5.9
(-2.2)
A 		3.9
(-3)
A 		3.8
(-3)
A 		18.7
(3)
A 		15
C 30.6
(-1.4)
A 		3.3
(-3)
A 		3.2
(-3)
A 		106.4
(3)
A 		103
avr 13.5
(-1.8) 		3.7
(-3) 		4.9
(-2.9) 		54.2
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 28.9
(2.7)
A 		4.5
(-2.8)
A 		3.7
(-3)
A 		22.9
(1.4)
A 		30
(3)
A 		7.6
(-2.1)
A 		26
B 27
(3)
A 		2.8
(-2.7)
A 		1.7
(-3)
A 		3.4
(-2.6)
A 		20.2
(1.4)
A 		25
(2.5)
A 		25
C 4.7
(-2.6)
A 		28.5
(1.6)
A 		2.6
(-3)
A 		6.6
(-2.3)
A 		3.9
(-2.8)
A 		36.2
(3)
A 		34
avr 20.2
(2.2) 		11.9
(-0.3) 		2.7
(-3) 		11
(-0.5) 		18
(1.5) 		22.9
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.4
(-2.2)
A 		0.8
(-3)
A 		2
(-1.5)
A 		5.5
(3)
A 		5
B 1.9
(-1.1)
A 		1
(-2.8)
A 		0.9
(-3)
A 		4
(3)
A 		3
C 10.1
(0.2)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		17.9
(3)
A 		17
avr 4.5
(-0.4) 		0.9
(-3) 		1.3
(-2.7) 		9.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.3
(0.3)
A 		1.6
(-2.4)
A 		0.8
(-3)
A 		5.8
(0.7)
A 		9
(3)
A 		1.8
(-2.3)
A 		8
B 9.4
(3)
A 		0.9
(-2.7)
A 		0.4
(-3)
A 		0.9
(-2.7)
A 		8.2
(2.2)
A 		9.3
(2.9)
A 		9
C 1.7
(-2.5)
A 		8.7
(1.2)
A 		0.7
(-3)
A 		1.3
(-2.7)
A 		1.3
(-2.7)
A 		12.1
(3)
A 		11
avr 5.5
(1.1) 		3.7
(-0.4) 		0.6
(-3) 		2.7
(-1.2) 		6.2
(1.7) 		7.7
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189096_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1908
Sequence Type Exemplar sequence
Representative Public ID W03G9.5 NCBI
Target Description W03G9.5 /REP_DB=WormBase Gene ID /WP=CE14562 /TR=O44751 /GB=AAB96740.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059089(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059089 NCBI Caenorhabditis elegans W03G9.5 (W03G9.5) mRNA, complete cds. 11/11 None
GENEFINDER00000033401 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4964895:4970246:-1 11/11 None
SNAP00000033393 ENSEMBL cdna:SNAP chromosome:CEL140:I:4968008:4971033:-1 11/11 None
W03G9.5 ENSEMBL cdna:known chromosome:CEL140:I:4968008:4970246:-1 gene:W03G9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4968007-4970246(-) 99.93 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl W03G9.5
Entrez Gene 189171 Entrez gene
SwissProt O44751 EMBL-EBI
WormBase CE14562 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491490 W03G9.5 [Caenorhabditis elegans] gb|AAB96740.1| Hypothetical protein W03G9.5 [Caenorhabditis elegans] 0.0
blast CAE65704 Hypothetical protein CBG10779 [Caenorhabditis briggsae] 0.0
blast NP_491489 W03G9.4 [Caenorhabditis elegans] gb|AAB96739.1| Aminopeptidase p protein 1 [Caenorhabditis elegans] 0.0
blast CAE73103 Hypothetical protein CBG20483 [Caenorhabditis briggsae] 0.0
blast CAE59641 Hypothetical protein CBG03054 [Caenorhabditis briggsae] 3.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.1E-8
Sequence
Target Sequence 
>C. ELEGANS:189096_AT
cttcttcgagatcttctcatgaatatttttgttcgacgaaatttcaatgctcaaatgaaa
gttgattgggagaaaggtggacgatatgaaagccattttgagaagaaaacttcaactttg
ccagttgttatcgagaaagacatgactgaagtggatctgtcaaagttgctgaatgttccg
caaaatgagagaaatataacaatggaagaaattatagctgctggtaaaacgacagaggaa
gagggactgaatactgctcaagatgatacgattgttgaggatgaaaatggatttttggga
aaacaagaagccaagccggcgacaccatctgctcgatctgaaaccagtaagaaagtgaaa
aggagatatattgcgagaacaccatcggcgcataagattgaacagattgaaaagaactgg
aagaagaaagaggaagaagcgaataaagagaagttgctgaagaatgcacgggcggcacga
agagccaaagaagattttattgttccggaggataatacggttcaaaaaagaaaactcgag
agcacacaactgtcgtctgcagtttccacgaaatccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTTCGAGATCTTCTCATGAATA 371 221 850 Antisense
AACTTTGCCAGTTGTTATCGAGAAA 641 137 963 Antisense
GAAGTGGATCTGTCAAAGTTGCTGA 270 335 997 Antisense
GGGACTGAATACTGCTCAAGATGAT 631 489 1092 Antisense
AACAAGAAGCCAAGCCGGCGACACC 240 133 1151 Antisense
ACCATCTGCTCGATCTGAAACCAGT 115 87 1173 Antisense
GAGAACACCATCGGCGCATAAGATT 387 391 1224 Antisense
GTTGCTGAAGAATGCACGGGCGGCA 710 439 1302 Antisense
TGCACGGGCGGCACGAAGAGCCAAA 543 575 1314 Antisense
CGAGAGCACACAACTGTCGTCTGCA 57 251 1386 Antisense
GTCTGCAGTTTCCACGAAATCCACT 539 471 1404 Antisense
Sequence Source Affymetrix Proprietary Database