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[189093_at]

Description M106.4 /REP_DB=WormBase Gene ID /WP=CE18084 /TR=SW:Q09580 /GB=CAA87052.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=GMP synthase
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 37      4grp_high_8_8 > 02      6grp_highest_nonorm > 61      6grp_total > 26      4grp_total > 14      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 667.4
(2.3)
P 		535.4
(-3)
P 		601.9
(-0.3)
P 		685.7
(3)
P 		150
B 648
(0.5)
P 		561.4
(-3)
P 		595
(-1.6)
P 		708.6
(3)
P 		147
C 666.8
(0.7)
P 		688.4
(3)
P 		632.7
(-3)
P 		644.4
(-1.7)
P 		56
avr 660.7
(1.7) 		595.1
(-3) 		609.9
(-1.9) 		679.6
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 518.2
(1.3)
P 		594.6
(2.7)
P 		290.2
(-3)
P 		426.9
(-0.4)
P 		412.5
(-0.7)
P 		608.4
(3)
P 		318
B 387
(-0.5)
P 		482.1
(3)
P 		320.4
(-3)
P 		471.6
(2.6)
P 		435.8
(1.3)
P 		348
(-2)
P 		162
C 567.2
(2.7)
P 		579.4
(3)
P 		459.1
(0.4)
P 		314.6
(-2.8)
P 		427.9
(-0.3)
P 		306.4
(-3)
P 		273
avr 490.8
(1.1) 		552
(3) 		356.6
(-3) 		404.4
(-1.5) 		425.4
(-0.9) 		420.9
(-1) 		195
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 243
(3)
P 		116.2
(-2.3)
P 		157.4
(-0.6)
P 		100.4
(-3)
P 		143
B 206.6
(3)
P 		138.7
(-2.9)
P 		137.9
(-3)
P 		151
(-1.9)
P 		69
C 220.7
(3)
P 		197.9
(1.8)
P 		220.5
(3)
P 		108.7
(-3)
P 		112
avr 223.4
(3) 		150.9
(-1.2) 		171.9
(0) 		120
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 95.5
(-1.7)
P 		211.5
(3)
P 		63.2
(-3)
P 		108.3
(-1.2)
P 		124.5
(-0.5)
P 		148.1
(0.4)
P 		148
B 134.6
(0.4)
P 		160.5
(2)
P 		77.8
(-3)
P 		124.9
(-0.2)
P 		177.1
(3)
P 		129.8
(0.1)
P 		99
C 210.2
(3)
P 		176.8
(1.6)
P 		116.9
(-0.8)
P 		63.3
(-3)
P 		138.5
(0.1)
P 		102.6
(-1.4)
P 		147
avr 146.8
(0.8) 		182.9
(3) 		86
(-3) 		98.8
(-2.2) 		146.7
(0.8) 		126.8
(-0.5) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189093_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3867
Sequence Type Exemplar sequence
Representative Public ID M106.4 NCBI
Target Description M106.4 /REP_DB=WormBase Gene ID /WP=CE18084 /TR=SW:Q09580 /GB=CAA87052.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=GMP synthase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027085(11), NM_001027086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027085 NCBI Caenorhabditis elegans M106.4a (M106.4) mRNA, complete cds. 11/11 None
NM_001027086 NCBI Caenorhabditis elegans M106.4b (M106.4) mRNA, complete cds. 11/11 None
SNAP00000018721 ENSEMBL cdna:SNAP chromosome:CEL140:II:10864103:10866786:-1 11/11 None
GENEFINDER00000018726 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10864103:10868625:-1 11/11 None
M106.4a ENSEMBL cdna:known chromosome:CEL140:II:10863604:10868719:-1 gene:M106.4 11/11 None
M106.4b ENSEMBL cdna:known chromosome:CEL140:II:10864103:10868719:-1 gene:M106.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10864099-10868716(-) 100.0 100.0
Public Domain and Genome References
Ensembl M106.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87052 Hypothetical protein M106.4a [Caenorhabditis elegans] ref|NP_001022256.1| M106.4a [Caenorhabditis elegans] sp|Q09580|GUAA_CAEEL Probable GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase) 0.0
blast CAE48508 Hypothetical protein M106.4b [Caenorhabditis elegans] ref|NP_001022257.1| M106.4b [Caenorhabditis elegans] 0.0
blast CAE59594 Hypothetical protein CBG03001 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000991 EMBL-EBI Glutamine amidotransferase class-I 4.0E-45
Pfam IPR001674 EMBL-EBI GMP synthase, C-terminal 2.3E-114
Pfam IPR000991 EMBL-EBI Glutamine amidotransferase class-I 4.0E-45
Pfam IPR001674 EMBL-EBI GMP synthase, C-terminal 2.3E-114
Pfam IPR000991 EMBL-EBI Glutamine amidotransferase class-I 4.0E-45
Pfam IPR001674 EMBL-EBI GMP synthase, C-terminal 2.3E-114
Sequence
Target Sequence 
>C. ELEGANS:189093_AT
aaaccttccaaatcagtgctcacattcttccaatcaaaacagtcggtgttcaaggagatg
ccagatcctattcgtatgcagttgcactgtccaccgagcaacgaccaattccatggaaac
tcctgttcgcgtatgcttcagtcatcccgaagctgttccacggagtcaatcgagtcgtct
acgcatttggatcaaaaatcgagttttcgatcgaggacctgacgagaacatatcttgtac
cacacattgtcactaaacttcaaatggcggatcacatcgccaataatattctattcggac
gtgtcgctgcttcggatggtacgcagctgccaaatgttgggcacaaaattcaacagatgc
cagtcgtccttctgcctgttgattttgatcgtgatagagatatgattggatcatacaggc
actcgattgttcttcgtccgtttgtcacatcggactttatgactggtcaggctgcgattc
caggagttcacttaccggaagagactcttattgaaatggacaaggccatcagaaccaatg
ttcttggtatctctcgtgttcttctggacatgacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCTTCCAAATCAGTGCTCACAT 24 127 1784 Antisense
GATCCTATTCGTATGCAGTTGCACT 69 417 1847 Antisense
CACCGAGCAACGACCAATTCCATGG 491 199 1875 Antisense
TTCCATGGAAACTCCTGTTCGCGTA 455 697 1892 Antisense
CATCCCGAAGCTGTTCCACGGAGTC 103 211 1926 Antisense
GAGTCGTCTACGCATTTGGATCAAA 32 401 1955 Antisense
TATTCTATTCGGACGTGTCGCTGCT 535 663 2070 Antisense
GTCCTTCTGCCTGTTGATTTTGATC 341 475 2149 Antisense
TACAGGCACTCGATTGTTCTTCGTC 633 643 2197 Antisense
GTCAGGCTGCGATTCCAGGAGTTCA 207 467 2249 Antisense
TCTCGTGTTCTTCTGGACATGACCT 173 611 2335 Antisense
Sequence Source Affymetrix Proprietary Database