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[189092_s_at] aminoacylase-1

Description C10C5.4 /REP_DB=WormBase Gene ID /WP=CE20491 /TR=Q17899 /GB=CAA92447.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=aminoacylase-1
Cluster 6grp_total > 98      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 59.8
(-2.1)
A 		63.3
(-2)
A 		24.7
(-3)
A 		248.9
(3)
P 		224
B 36.6
(-3)
A 		81.5
(-1.8)
A 		68.5
(-2.1)
A 		256.5
(3)
P 		220
C 20.9
(-3)
A 		32.2
(-2.7)
A 		88.9
(-1.3)
M 		264
(3)
P 		243
avr 39.1
(-3) 		59
(-2.5) 		60.7
(-2.4) 		256.5
(3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 9.7
(-2.9)
A 		8.2
(-3)
A 		46.6
(-1.4)
A 		21.6
(-2.5)
A 		71.1
(-0.4)
P 		154.8
(3)
P 		147
B 32.5
(-1.4)
A 		3.7
(-3)
A 		4
(-3)
A 		15.1
(-2.4)
A 		105.6
(2.6)
P 		113.8
(3)
P 		110
C 36.3
(-1.4)
A 		22.7
(-2.2)
A 		9.9
(-3)
A 		27.4
(-1.9)
A 		86.6
(1.7)
A 		107.2
(3)
P 		97
avr 26.2
(-2.2) 		11.5
(-3) 		20.2
(-2.5) 		21.4
(-2.5) 		87.8
(1) 		125.3
(3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 21.8
(0.1)
A 		13.7
(-1.6)
A 		6.5
(-3)
A 		36.4
(3)
P 		30
B 11.7
(-3)
A 		20.1
(-1.8)
A 		15.9
(-2.4)
A 		54.7
(3)
P 		43
C 6.9
(-3)
A 		9.3
(-2.6)
A 		31
(0.8)
M 		44.5
(3)
P 		38
avr 13.5
(-3) 		14.4
(-2.8) 		17.8
(-2.2) 		45.2
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 1.8
(-3)
A 		2.9
(-2.8)
A 		10.2
(-1.6)
A 		5.5
(-2.4)
A 		21.5
(0.3)
P 		37.7
(3)
P 		36
B 11.3
(-1.5)
A 		1.2
(-3)
A 		1
(-3)
A 		4
(-2.6)
A 		42.9
(3)
P 		42.5
(2.9)
P 		42
C 13.4
(-1)
A 		6.9
(-2.2)
A 		2.5
(-3)
A 		5.5
(-2.5)
A 		28
(1.6)
A 		35.9
(3)
P 		33
avr 8.8
(-2.1) 		3.7
(-3) 		4.6
(-2.8) 		5
(-2.8) 		30.8
(1.6) 		38.7
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189092_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8693
Sequence Type Exemplar sequence
Representative Public ID C10C5.4 NCBI
Target Description C10C5.4 /REP_DB=WormBase Gene ID /WP=CE20491 /TR=Q17899 /GB=CAA92447.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=aminoacylase-1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069250 NCBI Caenorhabditis elegans C10C5.4 (aminoacylase-1) mRNA, complete cds. 11/11 None
SNAP00000010266 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9378639:9380326:1 11/11 None
GENEFINDER00000010274 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9378639:9380326:1 11/11 None
C10C5.4 ENSEMBL cdna:known chromosome:CEL140:IV:9378639:9380361:1 gene:C10C5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9378644-9380332(+) 100.0 100.0
Public Domain and Genome References
Gene Title aminoacylase-1
Ensembl C10C5.4
Entrez Gene 177768 Entrez gene
SwissProt Q17899 EMBL-EBI
WormBase CE20491 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1632228_AT dm
DROSGENOME1:150424_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92447 Hypothetical protein C10C5.4 [Caenorhabditis elegans] ref|NP_501651.1| C10C5.4 [Caenorhabditis elegans] 0.0
blast CAA92445 Hypothetical protein C10C5.3 [Caenorhabditis elegans] ref|NP_501650.1| C10C5.3 [Caenorhabditis elegans] 0.0
blast CAA92446 Hypothetical protein C10C5.5 [Caenorhabditis elegans] ref|NP_501652.2| C10C5.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002933 EMBL-EBI Peptidase M20 4.2E-96
Sequence
Target Sequence 
>C. ELEGANS:189092_S_AT
ggtggcttaaagtaacagctcccggaaatccaggtcatggatctcagtttatggaaaaca
ccgcaatggagaagattgaacgtttccttgcaagtgcaagagcattccgaaacgagcaaa
aagaattgttagagaaaaatcctacctgggctcttggagatgttacgactttgaacgtga
atattttgaagggtggagttcaattcaatgtgattcccgaaaagtttgaagcttatgttg
atatcagattgacaccaaatcaagattttggtgaaattcgtgcaaaattggatcaatggg
tgaaagatgcaggagaaggtgtcacttatgaattttctcagcattccgactacaaaccag
tgtctccacatactcgagacgatccattttgggctgcatttgaagatagtttgaaacaag
agaattgtgaattcaccactgaagtatgtgtaggatcaactgattccagattcgtaagaa
aggctggagttcctgctatcaatttctctccaatgatcaacacacctgtccgagcacatg
cccataacgagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGCTTAAAGTAACAGCTCCCGG 377 499 581 Antisense
CAGCTCCCGGAAATCCAGGTCATGG 171 199 596 Antisense
GATTGAACGTTTCCTTGCAAGTGCA 467 433 654 Antisense
AAAATCCTACCTGGGCTCTTGGAGA 202 131 716 Antisense
TTCCGACTACAAACCAGTGTCTCCA 445 699 924 Antisense
GTGTCTCCACATACTCGAGACGATC 89 487 940 Antisense
GAGACGATCCATTTTGGGCTGCATT 660 393 956 Antisense
GGATCAACTGATTCCAGATTCGTAA 273 505 1033 Antisense
GGAGTTCCTGCTATCAATTTCTCTC 4 519 1066 Antisense
CAATTTCTCTCCAATGATCAACACA 553 179 1080 Antisense
TCCGAGCACATGCCCATAACGAGTT 164 587 1109 Antisense
Sequence Source Affymetrix Proprietary Database