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[189090_at] dehydrogenase

Description C06E4.6 /REP_DB=WormBase Gene ID /WP=CE03954 /TR=Q17724 /GB=AAA82473.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_total > 38      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 49.3
(-2)
A 		12.5
(-3)
A 		23.7
(-2.7)
A 		226.9
(3)
A 		214
B 62.2
(-2)
A 		51.9
(-2.7)
A 		48.2
(-3)
A 		128.4
(3)
A 		80
C 57.9
(-1.7)
A 		54.6
(-1.8)
A 		14.9
(-3)
A 		217.6
(3)
A 		203
avr 56.5
(-2) 		39.7
(-2.6) 		28.9
(-3) 		191
(3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 170.6
(2.1)
A 		51.7
(-2.7)
A 		57.7
(-2.4)
A 		43.3
(-3)
A 		48.7
(-2.8)
A 		192.3
(3)
A 		149
B 196.7
(3)
P 		52.2
(-2.1)
A 		47.8
(-2.2)
A 		26.6
(-3)
A 		26.3
(-3)
A 		109.2
(-0.1)
P 		170
C 188.9
(3)
P 		90.6
(-0.2)
A 		55.1
(-1.4)
A 		5.9
(-3)
A 		10.3
(-2.9)
A 		113.8
(0.5)
A 		183
avr 185.4
(3) 		64.8
(-1.5) 		53.5
(-1.9) 		25.3
(-3) 		28.4
(-2.9) 		138.4
(1.2) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 17.9
(-0)
A 		2.7
(-3)
A 		6.2
(-2.3)
A 		33.2
(3)
A 		31
B 19.8
(0.2)
A 		12.8
(-2.4)
A 		11.2
(-3)
A 		27.4
(3)
A 		16
C 19.2
(-0.3)
A 		15.7
(-1)
A 		5.2
(-3)
A 		36.7
(3)
A 		32
avr 19
(-0.2) 		10.4
(-2.3) 		7.5
(-3) 		32.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 31.4
(0.4)
A 		18.4
(-1.8)
A 		12.6
(-2.7)
A 		11
(-3)
A 		14.7
(-2.4)
A 		46.8
(3)
A 		36
B 68.4
(3)
P 		17.4
(-2)
A 		11.6
(-2.6)
A 		7
(-3)
A 		10.7
(-2.6)
A 		40.7
(0.3)
P 		61
C 70
(3)
P 		27.7
(-0.7)
A 		14
(-1.9)
A 		1.2
(-3)
A 		3.3
(-2.8)
A 		38.1
(0.2)
A 		69
avr 56.6
(3) 		21.2
(-1.2) 		12.7
(-2.2) 		6.4
(-3) 		9.6
(-2.6) 		41.9
(1.2) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9236
Sequence Type Exemplar sequence
Representative Public ID C06E4.6 NCBI
Target Description C06E4.6 /REP_DB=WormBase Gene ID /WP=CE03954 /TR=Q17724 /GB=AAA82473.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068753(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068753 NCBI Caenorhabditis elegans C06E4.6 (dehydrogenase) mRNA, complete cds. 11/11 None
SNAP00000041904 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7257201:7258226:-1 11/11 None
GENEFINDER00000041911 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7257201:7258199:-1 11/11 None
C06E4.6 ENSEMBL cdna:known chromosome:CEL140:IV:7257201:7258199:-1 gene:C06E4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7257206-7258205(-) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Ensembl C06E4.6
Entrez Gene 182329 Entrez gene
SwissProt Q17724 EMBL-EBI
WormBase CE03954 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82473 Hypothetical protein C06E4.6 [Caenorhabditis elegans] ref|NP_501154.1| C06E4.6 [Caenorhabditis elegans] 1.0E-130
blast AAA82473 Hypothetical protein C06E4.6 [Caenorhabditis elegans] ref|NP_501154.1| C06E4.6 [Caenorhabditis elegans] 1.0E-127
blast CAE61847 Hypothetical protein CBG05821 [Caenorhabditis briggsae] 1.0E-107
blast CAE61847 Hypothetical protein CBG05821 [Caenorhabditis briggsae] 1.0E-104
blast CAE61846 Hypothetical protein CBG05820 [Caenorhabditis briggsae] 1.0E-101
blast CAE61846 Hypothetical protein CBG05820 [Caenorhabditis briggsae] 5.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 8.5E-51
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 8.5E-51
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 8.8E-49
Sequence
Target Sequence 
>C. ELEGANS:189090_AT
gacgttaccactgctgaagggcaagatcttcttatttcatctaccttggataagttcgga
aaaattaatattttgatcaacaacgccggagctaatattccagattctcaaggacaaact
cgcactaaatgcagcatcgaaaatcttaccaagatgtttcagctcaatcttcagagcgtc
gtcgaaatggttcagaaagtgcgaccacatttggcaaaaacccgcggagagatcgtcaat
atttcaagtattggagcggggccagcggctcaacccgccagtccatactactcaagcgct
aaagctgctttggatcaatattctcgatgtgccgcaatcgacttgatttctgaaggaatt
cgtatcaacgttgttcaacctggttttgtttccactggattctcgacagctgctcgagga
cttagcgcggatgaatctgtcaaattctacgacttgatggggtccctaccacattgtatt
ccagctggatactgtggtcaaccagaccatctcgcatctgtaattgcattcctggttgat
cgaaaggtctccgagtacatcgtaggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTACCACTGCTGAAGGGCAAG 226 375 208 Antisense
ATCTTCTTATTTCATCTACCTTGGA 663 29 233 Antisense
CTCAATCTTCAGAGCGTCGTCGAAA 357 227 370 Antisense
CGCCAGTCCATACTACTCAAGCGCT 16 259 483 Antisense
GTTCAACCTGGTTTTGTTTCCACTG 250 445 580 Antisense
TTTCCACTGGATTCTCGACAGCTGC 332 669 596 Antisense
CGACAGCTGCTCGAGGACTTAGCGC 647 251 611 Antisense
CTACGACTTGATGGGGTCCCTACCA 196 225 654 Antisense
TCCCTACCACATTGTATTCCAGCTG 476 597 670 Antisense
AACCAGACCATCTCGCATCTGTAAT 586 147 707 Antisense
AAGGTCTCCGAGTACATCGTAGGAC 595 159 751 Antisense
Sequence Source Affymetrix Proprietary Database