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[189088_at]

Description F58E2.1 /REP_DB=WormBase Gene ID /WP=CE17129 /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor (ST.LOUIS) TR:Q9TYZ5 protein_id:AAC68964.1
Cluster 6grp_total > 99      4grp_total > 0      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 77.8
(-1.9)
A 		63.7
(-3)
A 		68.5
(-2.6)
P 		140.6
(3)
A 		77
B 49.1
(-1.3)
A 		34.4
(-3)
A 		85.9
(3)
A 		46.5
(-1.6)
A 		52
C 60.7
(3)
A 		60.3
(2.9)
A 		34.5
(-3)
A 		51.9
(1)
A 		26
avr 62.5
(-0.8) 		52.8
(-3) 		63
(-0.7) 		79.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 56.6
(-0.7)
A 		33.4
(-3)
A 		64.4
(0)
M 		61.4
(-0.3)
A 		88.1
(2.4)
P 		94.6
(3)
P 		61
B 82.6
(2.1)
A 		91.1
(3)
A 		58.9
(-0.6)
P 		56.4
(-0.9)
A 		89.7
(2.8)
P 		37.2
(-3)
A 		54
C 38.6
(-0.8)
A 		56.9
(1.1)
A 		55.2
(0.9)
A 		16.6
(-3)
A 		75.7
(3)
P 		57.9
(1.2)
A 		59
avr 59.3
(-0.8) 		60.5
(-0.6) 		59.5
(-0.8) 		44.8
(-3) 		84.5
(3) 		63.2
(-0.2) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 28.3
(3)
A 		13.8
(-3)
A 		17.9
(-1.3)
P 		20.6
(-0.2)
A 		15
B 15.7
(0.8)
A 		8.5
(-3)
A 		19.9
(3)
A 		9.9
(-2.3)
A 		11
C 20.1
(3)
A 		17.3
(1.5)
A 		12
(-1.3)
A 		8.7
(-3)
A 		11
avr 21.4
(3) 		13.2
(-2.9) 		16.6
(-0.5) 		13.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 10.4
(-3)
A 		11.9
(-2.4)
A 		14
(-1.7)
M 		15.6
(-1.1)
A 		26.6
(3)
P 		23
(1.7)
P 		16
B 28.8
(1)
A 		30.3
(1.4)
A 		14.3
(-2.9)
P 		14.9
(-2.7)
A 		36.4
(3)
P 		13.9
(-3)
A 		23
C 14.3
(0.1)
A 		17.4
(1)
A 		14.1
(0.1)
A 		3.3
(-3)
A 		24.5
(3)
P 		19.4
(1.6)
A 		21
avr 17.8
(-0.8) 		19.9
(-0.1) 		14.1
(-2.1) 		11.3
(-3) 		29.2
(3) 		18.8
(-0.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10422
Sequence Type Exemplar sequence
Representative Public ID F58E2.1 NCBI
Target Description F58E2.1 /REP_DB=WormBase Gene ID /WP=CE17129 /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor (ST.LOUIS) TR:Q9TYZ5 protein_id:AAC68964.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F58E2.1 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:3471560:3473581:1 gene:F58E2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3471565-3473587(+) 100.0 100.0
Public Domain and Genome References
Ensembl F58E2.1
Sequence
Target Sequence 
>C. ELEGANS:189088_AT
tacaggataccatgccttttcctcgtctacttctcagtcccattccacttcttgcctcca
tttctgaatattccggagcaggagcaagctcgtcttcatgttatgaaagctcttccatgt
ctgcctccatttacatataacaataatatgatgtttgtggcaagcatcgatctaaaaatt
ccatttatctgcttggtgtttagttgcatgttttttactggtgcaactctaacttttctc
ggattaactctgaaaaagttggcatccatcaaaactcgctcagcttattctacgaaaaca
atagaatttcagagaaaactgataagagcaaccgcctcaacgataataattctgctaacc
ccaactctaatagtcattttgctcatagctacccggtatcataaccagaagctaaataat
ctggtccacttgatcttgtcggtacacggaatcgaatctactattgtgatggttttggtt
cacaaaccatatcgagagatctggacctcgaggtgtttgacaggcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGGATACCATGCCTTTTCCTCG 164 645 406 Antisense
CTTGCCTCCATTTCTGAATATTCCG 320 219 456 Antisense
GAGCAAGCTCGTCTTCATGTTATGA 328 391 487 Antisense
TTATGAAAGCTCTTCCATGTCTGCC 439 681 506 Antisense
GTCTGCCTCCATTTACATATAACAA 587 471 524 Antisense
TACTGGTGCAACTCTAACTTTTCTC 455 645 621 Antisense
ATCCATCAAAACTCGCTCAGCTTAT 690 39 669 Antisense
ATAATAATTCTGCTAACCCCAACTC 363 23 748 Antisense
TTTTGCTCATAGCTACCCGGTATCA 194 677 782 Antisense
TAATCTGGTCCACTTGATCTTGTCG 482 635 822 Antisense
GGACCTCGAGGTGTTTGACAGGCGA 489 507 908 Antisense
Sequence Source Affymetrix Proprietary Database