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[189087_s_at] heat shock protein HSP16-1 /// heat shock protein HSP16-1

Description T27E4.8 /REP_DB=WormBase Gene ID /WP=CE14249 /GEN=hsp-16A /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=heat shock protein HSP16-1
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 48      6grp_total > 67      4grp_total > 15      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7132
1 2 3 4 range
A 8524.2
(3)
P 		1391.9
(-3)
P 		3024.7
(-1.6)
P 		6536.8
(1.3)
P 		7132
B 4745.1
(2)
P 		1504.3
(-3)
P 		3687.7
(0.3)
P 		5430.4
(3)
P 		3926
C 7267
(3)
P 		1846.4
(-3)
P 		3464.6
(-1.2)
P 		7304.4
(3)
P 		5458
avr 6845.4
(3) 		1580.9
(-3) 		3392.3
(-0.9) 		6423.9
(2.5) 		5265

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3977
1 2 3 4 5 6 range
A 3626.3
(-2.4)
P 		3354.7
(-3)
P 		4542.8
(-0.2)
P 		4299.8
(-0.8)
P 		3776.6
(-2)
P 		5925.1
(3)
P 		2570
B 4164.2
(-2.3)
P 		4686.8
(-1.1)
P 		3843.1
(-3)
P 		4389.3
(-1.8)
P 		4302.2
(-2)
P 		6524.9
(3)
P 		2682
C 4380.4
(-1.9)
P 		5207.3
(-0.5)
P 		3949.9
(-2.6)
P 		4324.7
(-1.9)
P 		3683.3
(-3)
P 		7331.8
(3)
P 		3649
avr 4057
(-2.7) 		4416.3
(-1.9) 		4111.9
(-2.6) 		4337.9
(-2.1) 		3920.7
(-3) 		6593.9
(3) 		2673
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2802
1 2 3 4 range
A 3103.7
(3)
P 		302.1
(-3)
P 		790.7
(-2)
P 		956.9
(-1.6)
P 		2802
B 1513.2
(3)
P 		371.5
(-3)
P 		854.5
(-0.5)
P 		1157.2
(1.1)
P 		1142
C 2405.6
(3)
P 		530.9
(-3)
P 		1207.5
(-0.8)
P 		1231.6
(-0.8)
P 		1875
avr 2340.8
(3) 		401.5
(-3) 		950.9
(-1.3) 		1115.2
(-0.8) 		1939

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1786
1 2 3 4 5 6 range
A 668.5
(-3)
P 		1193.1
(1.1)
P 		989.3
(-0.5)
P 		1090.5
(0.3)
P 		1139.6
(0.7)
P 		1442.6
(3)
P 		774
B 1448.9
(-0.9)
P 		1560.1
(-0.5)
P 		933.2
(-3)
P 		1162.6
(-2.1)
P 		1747.9
(0.3)
P 		2433.1
(3)
P 		1500
C 1623.6
(-0.1)
P 		1588.9
(-0.3)
P 		1005.3
(-2.5)
P 		869.7
(-3)
P 		1191.9
(-1.8)
P 		2454.4
(3)
P 		1585
avr 1247
(-1.6) 		1447.4
(-0.5) 		975.9
(-3) 		1040.9
(-2.7) 		1359.8
(-1) 		2110
(3) 		1134
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189087_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11959
Sequence Type Exemplar sequence
Representative Public ID T27E4.8 NCBI
Target Description T27E4.8 /REP_DB=WormBase Gene ID /WP=CE14249 /GEN=hsp-16A /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=heat shock protein HSP16-1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072953(11), NM_072956(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072953 NCBI Caenorhabditis elegans Heat Shock Protein family member (hsp-16.1) (hsp-16.1) mRNA, complete cds. 11/11 None
NM_072956 NCBI Caenorhabditis elegans Heat Shock Protein family member (hsp-16.11) (hsp-16.11) mRNA, complete cds. 11/11 None
SNAP00000044632 ENSEMBL cdna:SNAP chromosome:CEL140:V:9089880:9090369:-1 11/11 None
SNAP00000044635 ENSEMBL cdna:SNAP chromosome:CEL140:V:9092702:9093191:1 11/11 None
GENEFINDER00000044638 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9089880:9090369:-1 11/11 None
GENEFINDER00000044644 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9092702:9093191:1 11/11 None
T27E4.8 ENSEMBL cdna:known chromosome:CEL140:V:9089880:9090369:-1 gene:T27E4.8 11/11 None
T27E4.2 ENSEMBL cdna:known chromosome:CEL140:V:9092687:9093630:1 gene:T27E4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9092702-9093192(+) 100.0 100.0
chrV:9089880-9090370(-) 100.0 100.0
Public Domain and Genome References
Gene Title heat shock protein HSP16-1
heat shock protein HSP16-1
Gene Symbol hsp-16.11
hsp-16.1
Ensembl T27E4.8
T27E4.2
Entrez Gene 179286 Entrez gene
179289 Entrez gene
SwissProt P34696 EMBL-EBI
WormBase CE14249 Wormbase
CE14249 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04839 Heat shock protein protein 16.1 [Caenorhabditis elegans] gb|AAB04842.1| Heat shock protein protein 16.11 [Caenorhabditis elegans] ref|NP_505357.1| Heat Shock Protein family member (hsp-16.11) [Caenorhabditis elegans] ref|NP_505354.1| Heat Shock Protein family member (hsp-16.1) [Caenorhabditis elegans] gb|AAA28068.1| heat shock protein 16-1a [Caenorhabditis elegans] sp|P34696|HSP11_CAEEL Heat shock protein Hsp16-1 4.0E-77
blast AAA28066 heat shock protein 16-1 [Caenorhabditis elegans] 9.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR002068 EMBL-EBI Heat shock protein Hsp20 1.9E-35
Sequence
Target Sequence 
>C. ELEGANS:189087_S_AT
gatatggctcagatggaacgtcaatttactccagtttgcagaggctctccatctgaatct
tctgagattgttaacaatgatcaaaagtttgccataaatctcaatgtctcgcagttcaag
ccagaagatttgaaaattaatttggatggacatacattatcaattcaaggagaacaagaa
ttaaagactgaacatggatattcaaagaaatcattttctcgtgttattcttctacccgaa
gatgttgatgttggtgcagttgcttcaaatctttcagaagatggaaaactttcaattgaa
gcaccaaagaaggaagcgattcaaggaagatctattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGGCTCAGATGGAACGTCAAT 666 425 73 Antisense
GGAACGTCAATTTACTCCAGTTTGC 271 529 87 Antisense
TACTCCAGTTTGCAGAGGCTCTCCA 504 645 99 Antisense
TGCAGAGGCTCTCCATCTGAATCTT 425 577 109 Antisense
AAGTTTGCCATAAATCTCAATGTCT 356 157 157 Antisense
AATCTCAATGTCTCGCAGTTCAAGC 681 169 169 Antisense
GTCTCGCAGTTCAAGCCAGAAGATT 2 471 178 Antisense
GGATGGACATACATTATCAATTCAA 312 515 216 Antisense
TTCTACCCGAAGATGTTGATGTTGG 398 689 302 Antisense
AACTTTCAATTGAAGCACCAAAGAA 274 139 359 Antisense
GAAGCGATTCAAGGAAGATCTATTC 697 341 385 Antisense
Sequence Source Affymetrix Proprietary Database