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[189084_s_at] dehydrogenase

Description C15H11.4 /REP_DB=WormBase Gene ID /WP=CE08181 /TR=Q9XVS9 /GB=CAB02732.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 73      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 55      6grp_total > 74      4grp_total > 58      6grp_highest_sub > 04      6grp_cgc > 76      6grp_high1_sub > 03_04      6grp_cgc_sub > 03_04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 654
1 2 3 4 range
A 1537.3
(0.6)
P 		1553
(0.7)
P 		1800.4
(3)
P 		1146.1
(-3)
P 		654
B 1370
(-1.3)
P 		1718.3
(3)
P 		1638.1
(2)
P 		1227.5
(-3)
P 		491
C 1496.4
(-0.6)
P 		1781.6
(3)
P 		1628.9
(1.1)
P 		1305.8
(-3)
P 		476
avr 1467.9
(0.1) 		1684.3
(2.9) 		1689.1
(3) 		1226.5
(-3) 		463

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1208
1 2 3 4 5 6 range
A 1193
(-3)
P 		1654.3
(-0.7)
P 		1923.2
(0.6)
P 		2400.6
(3)
P 		1503.6
(-1.5)
P 		1852.5
(0.3)
P 		1208
B 1568.6
(-0.4)
P 		1405.3
(-3)
P 		1599
(0.1)
P 		1783.1
(3)
P 		1607.3
(0.2)
P 		1745.2
(2.4)
P 		378
C 1517.4
(-1.8)
P 		1349.8
(-3)
P 		2069.5
(2)
P 		2213.7
(3)
P 		1743.2
(-0.3)
P 		1697.6
(-0.6)
P 		864
avr 1426.3
(-3) 		1469.8
(-2.6) 		1863.9
(0.7) 		2132.5
(3) 		1618
(-1.4) 		1765.1
(-0.1) 		706
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 400
1 2 3 4 range
A 559.7
(3)
P 		337.1
(-0.4)
P 		470.7
(1.6)
P 		167.8
(-3)
P 		392
B 436.9
(3)
P 		424.4
(2.6)
P 		379.6
(1)
P 		261.6
(-3)
P 		175
C 495.3
(1.7)
P 		512.2
(2)
P 		567.7
(3)
P 		220.2
(-3)
P 		348
avr 497.3
(3) 		424.6
(1.4) 		472.7
(2.5) 		216.5
(-3) 		281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 219.9
(-3)
P 		588.3
(2.7)
P 		418.8
(0.1)
P 		608.9
(3)
P 		453.7
(0.6)
P 		451
(0.6)
P 		389
B 545.8
(0.6)
P 		467.8
(-1.2)
P 		388.3
(-3)
P 		472.3
(-1.1)
P 		653
(3)
P 		650.8
(3)
P 		265
C 562.4
(2.8)
P 		411.9
(-3)
P 		526.7
(1.4)
P 		445.2
(-1.7)
P 		564.1
(2.8)
P 		568.3
(3)
P 		156
avr 442.7
(-3) 		489.3
(-0.6) 		444.6
(-2.9) 		508.8
(0.5) 		556.9
(3) 		556.7
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189084_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13859
Sequence Type Exemplar sequence
Representative Public ID C15H11.4 NCBI
Target Description C15H11.4 /REP_DB=WormBase Gene ID /WP=CE08181 /TR=Q9XVS9 /GB=CAB02732.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074169(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074169 NCBI Caenorhabditis elegans C15H11.4 (dehydrogenase) mRNA, complete cds. 11/11 None
SNAP00000026579 ENSEMBL cdna:SNAP chromosome:CEL140:V:14422788:14424015:-1 11/11 None
GENEFINDER00000026586 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14422788:14424015:-1 11/11 None
C15H11.4 ENSEMBL cdna:known chromosome:CEL140:V:14422661:14424028:-1 gene:C15H11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14422787-14424015(-) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Gene Symbol dhs-22
Ensembl C15H11.4
Entrez Gene 179940 Entrez gene
SwissProt Q9XVS9 EMBL-EBI
WormBase CE08181 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251013_AT short-chain dehydrogenase/reductase (SDR) family protein at
CANINE_2:CFAAFFX.4808.1.S1_AT similar to Retinol dehydrogenase 13 cfa
DROSOPHILA_2:1634019_AT dm
DROSGENOME1:141701_AT dm
HU35KSUBB:RC_H44971_AT retinol dehydrogenase 13 (all-trans and 9-cis) hs
U133_X3P:HS.178617.0.S2_3P_A_AT retinol dehydrogenase 13 (all-trans and 9-cis) hs
U133_X3P:HS.178617.0.S1_3P_AT retinol dehydrogenase 13 (all-trans and 9-cis) hs
HG-U133_PLUS_2:225449_AT retinol dehydrogenase 13 (all-trans and 9-cis) hs
HG-U133B:225449_AT retinol dehydrogenase 13 (all-trans and 9-cis) hs
HG-U133_PLUS_2:225467_S_AT retinol dehydrogenase 13 (all-trans and 9-cis) hs
HG-U133B:225467_S_AT retinol dehydrogenase 13 (all-trans and 9-cis) hs
HG-U95B:57866_AT retinol dehydrogenase 13 (all-trans and 9-cis) hs
HG-U133_PLUS_2:227360_AT Retinol dehydrogenase 13 (all-trans and 9-cis) hs
HG-U133B:227360_AT Retinol dehydrogenase 13 (all-trans and 9-cis) hs
HG-U95B:57864_AT Retinol dehydrogenase 13 (all-trans and 9-cis) hs
HG-U95D:83891_AT Retinol dehydrogenase 13 (all-trans and 9-cis) hs
HU35KSUBA:AA447952_AT Retinol dehydrogenase 13 (all-trans and 9-cis) hs
U133_X3P:HS.178617.1.A1_3P_AT Retinol dehydrogenase 13 (all-trans and 9-cis) hs
MU11KSUBA:AA060217_S_AT retinol dehydrogenase 13 (all-trans and 9-cis) mm
MG-U74AV2:94765_AT retinol dehydrogenase 13 (all-trans and 9-cis) mm
MOE430A:1433799_AT retinol dehydrogenase 13 (all-trans and 9-cis) mm
MOUSE430A_2:1433799_AT retinol dehydrogenase 13 (all-trans and 9-cis) mm
MOUSE430_2:1433799_AT retinol dehydrogenase 13 (all-trans and 9-cis) mm
MG-U74AV2:161882_F_AT Retinol dehydrogenase 13 (all-trans and 9-cis), mRNA (cDNA clone MGC:105205 IMAGE:30613493) mm
MU19KSUBA:TC19241_AT Retinol dehydrogenase 13 (all-trans and 9-cis), mRNA (cDNA clone MGC:105205 IMAGE:30613493) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02732 Hypothetical protein C15H11.4 [Caenorhabditis elegans] ref|NP_506570.1| C15H11.4 [Caenorhabditis elegans] 1.0E-178
blast CAE60904 Hypothetical protein CBG04620 [Caenorhabditis briggsae] 1.0E-151
blast AAY84921 IP09970p [Drosophila melanogaster] 2.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.5E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506570.1 1 10-29
C15H11.4 1 10-29
SNAP00000026579 1 10-29
GENEFINDER00000026586 1 10-29
Sequence
Target Sequence 
>C. ELEGANS:189084_S_AT
accatttgggaccatttctgctcaccgaactttttctgccagctgttaagaagtcttcct
acgctcgaatcatcaatgtttcatctcgtattcatttgaaatccgagaaaattaatttgg
ctactgtagatgacaagaaatcgtttggaatgatgaaatcgtacagacagagcaagttgg
caaatgttatgcacgcaagagccttgactaaggaattgagaaaggacggagccgaacacg
tgactgttaactccctgcacccaggagttgttaataccgagctcgcgagaaataccattt
tgaatacaccaggaatcaagcagattacagctgttttccgttggttcctcatgaaaacca
gccgcgacggagctcaaacttcaatcttccttgcattgggcaaaaagatcggtggaatca
gtggaaaatactttgccgattgcaagttgacccaagaaaacccactagccttggatgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCATTTGGGACCATTTCTGCTCAC 546 85 479 Antisense
CGAACTTTTTCTGCCAGCTGTTAAG 187 253 504 Antisense
TTAAGAAGTCTTCCTACGCTCGAAT 219 683 524 Antisense
CGAACACGTGACTGTTAACTCCCTG 626 219 711 Antisense
TAACTCCCTGCACCCAGGAGTTGTT 483 637 726 Antisense
GGAGTTGTTAATACCGAGCTCGCGA 275 517 742 Antisense
TGTTTTCCGTTGGTTCCTCATGAAA 540 559 810 Antisense
TGAAAACCAGCCGCGACGGAGCTCA 178 573 830 Antisense
GAGCTCAAACTTCAATCTTCCTTGC 65 389 848 Antisense
TTGCCGATTGCAAGTTGACCCAAGA 546 701 911 Antisense
GAAAACCCACTAGCCTTGGATGATC 95 355 934 Antisense
Sequence Source Affymetrix Proprietary Database