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[189083_at] HUD

Description F35H8.5 /REP_DB=WormBase Gene ID /WP=CE00983 /GEN=exc-7 /TR=Q20084 /GB=CAA85327.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=HUD
Cluster 6grp_total > 92      4grp_total > 38      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 217.4
(3)
A 		147.7
(0.1)
A 		74.3
(-3)
A 		130
(-0.7)
A 		143
B 177.3
(2.6)
A 		187.6
(3)
A 		29.3
(-3)
A 		121.6
(0.5)
A 		158
C 235.3
(3)
A 		41.3
(-3)
A 		101.8
(-1.1)
A 		170.8
(1)
A 		194
avr 210
(3) 		125.5
(-0.6) 		68.5
(-3) 		140.8
(0.1) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 134.2
(-1.5)
A 		208.5
(3)
A 		172.3
(0.8)
A 		175.6
(1)
A 		108.4
(-3)
A 		129.1
(-1.8)
A 		100
B 162.6
(2)
A 		182
(3)
A 		134.2
(0.6)
A 		131
(0.5)
A 		157.5
(1.8)
P 		61.1
(-3)
A 		121
C 155.9
(0.6)
M 		44.7
(-3)
A 		74.9
(-2)
A 		124
(-0.4)
A 		228.2
(3)
P 		69.6
(-2.2)
A 		184
avr 150.9
(1.9) 		145.1
(1.5) 		127.1
(0.1) 		143.5
(1.4) 		164.7
(3) 		86.6
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 79.2
(3)
A 		32.1
(-1.7)
A 		19.4
(-3)
A 		19
(-3)
A 		60
B 56.5
(3)
A 		46.3
(1.8)
A 		6.8
(-3)
A 		25.9
(-0.7)
A 		50
C 77.9
(3)
A 		11.9
(-3)
A 		35.5
(-0.9)
A 		28.8
(-1.5)
A 		66
avr 71.2
(3) 		30.1
(-1.9) 		20.6
(-3) 		24.6
(-2.5) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 24.7
(-3)
A 		74.2
(3)
A 		37.5
(-1.4)
A 		44.5
(-0.6)
A 		32.7
(-2)
A 		31.4
(-2.2)
A 		50
B 56.6
(1.9)
A 		60.6
(2.5)
A 		32.6
(-1.6)
A 		34.7
(-1.3)
A 		64
(3)
P 		22.8
(-3)
A 		41
C 57.8
(1.4)
M 		13.7
(-3)
A 		19.1
(-2.5)
A 		24.9
(-1.9)
A 		73.8
(3)
P 		23.3
(-2)
A 		60
avr 46.4
(1) 		49.5
(1.6) 		29.7
(-2.2) 		34.7
(-1.3) 		56.8
(3) 		25.8
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2639
Sequence Type Exemplar sequence
Representative Public ID F35H8.5 NCBI
Target Description F35H8.5 /REP_DB=WormBase Gene ID /WP=CE00983 /GEN=exc-7 /TR=Q20084 /GB=CAA85327.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=HUD
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063656 NCBI Caenorhabditis elegans F35H8.5 (HUD) mRNA, complete cds. 11/11 None
SNAP00000035511 ENSEMBL cdna:SNAP chromosome:CEL140:II:9578025:9580988:1 11/11 None
GENEFINDER00000035518 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9576219:9580988:1 11/11 None
F35H8.5 ENSEMBL cdna:known chromosome:CEL140:II:9575882:9581437:1 gene:F35H8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9576215-9580985(+) 100.0 100.0
Public Domain and Genome References
Gene Title HUD
Gene Symbol exc-7
Ensembl F35H8.5
Entrez Gene 174506 Entrez gene
SwissProt Q20084 EMBL-EBI
WormBase CE00983 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.26545.1.S1_AT similar to ELAV-like protein 3 isoform 2 cfa
CANINE_2:CFAAFFX.26545.1.S1_S_AT similar to ELAV-like protein 3 isoform 2 cfa
HG-U133_PLUS_2:206338_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
HG-U133A:206338_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
HG-FOCUS:206338_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
HG-U133A_2:206338_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
HU35KSUBB:RC_F02739_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
HU35KSUBC:RC_C14812_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
HUGENEFL:S69265_S_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
HG-U133_PLUS_2:227612_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
HG-U133B:227612_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
U133_X3P:HS2.1701.3.S1_3P_S_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
U133_X3P:HS.21433.0.A1_3P_X_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
U133_X3P:HS.21433.0.A1_3P_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
HG-U133_PLUS_2:1555602_A_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
HG-U95AV2:38512_R_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
HG-U95B:47818_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
HG-U95B:59711_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) hs
MOE430A:1452524_A_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) mm
MOUSE430A_2:1452524_A_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) mm
MOUSE430_2:1452524_A_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) mm
MG-U74AV2:92239_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) mm
MU11KSUBA:U29148_S_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) mm
MG-U74BV2:108874_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) (Elavl3), mRNA mm
MOE430B:1444151_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) (Elavl3), mRNA mm
MOUSE430_2:1444151_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) (Elavl3), mRNA mm
RG-U34B:RC_AI044893_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) rn
RAE230B:1382169_X_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) rn
RAT230_2:1382169_X_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) rn
RAE230B:1382168_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) rn
RAT230_2:1382168_AT ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85327 Hypothetical protein F35H8.5 [Caenorhabditis elegans] ref|NP_496057.1| F35H8.5 [Caenorhabditis elegans] 0.0
blast CAE57899 Hypothetical protein CBG00948 [Caenorhabditis briggsae] 0.0
blast XP_394166 PREDICTED: similar to ENSANGP00000005999 [Apis mellifera] 4.0E-74
blast XP_394166 PREDICTED: similar to ENSANGP00000005999 [Apis mellifera] 5.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-25
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.2E-19
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.6E-21
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-25
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.2E-19
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.6E-21
Sequence
Target Sequence 
>C. ELEGANS:189083_AT
tgcaccatgctccaattacttcaaagtacagatattccccaatgggcgccatcactgcag
tatcccagccaaccgctacacttcctgctgactatttgacaacttctgcgcttcttcaga
tgtctcagttgaatgctcttgctggcctgaacccttttgccacagcaacagccgtacctg
atttcacagcttcattaatagcgcatcagcaacaacaacacgcagttgctcaacaacatg
ctgcacaaacagcgagccctccggcaacaaatggacaagttgctggattagcagctcatg
ctcagttatctgcattgtcagcttcagttgctgccacgttaccgccatcagatactgctg
gatattgccttttcgtatataatctttcatcagatactgatgatacactgttatggcagt
tattctcacagtttggagcaattgttaatgttaagattctacgagacctgacacaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACCATGCTCCAATTACTTCAAA 473 577 770 Antisense
AGATATTCCCCAATGGGCGCCATCA 521 65 799 Antisense
CTACACTTCCTGCTGACTATTTGAC 329 227 845 Antisense
CTGCGCTTCTTCAGATGTCTCAGTT 306 237 875 Antisense
TCAGTTGAATGCTCTTGCTGGCCTG 555 623 894 Antisense
ACAGCCGTACCTGATTTCACAGCTT 92 109 937 Antisense
TCAGCTTCAGTTGCTGCCACGTTAC 68 623 1087 Antisense
GTTACCGCCATCAGATACTGCTGGA 595 445 1107 Antisense
ACTGCTGGATATTGCCTTTTCGTAT 4 99 1123 Antisense
ATGGCAGTTATTCTCACAGTTTGGA 599 51 1182 Antisense
GATTCTACGAGACCTGACACAACAG 284 431 1224 Antisense
Sequence Source Affymetrix Proprietary Database