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[189082_at] dehydrogenase

Description C06E4.3 /REP_DB=WormBase Gene ID /WP=CE03951 /TR=Q17726 /GB=AAA82475.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_total > 58      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 117.3
(3)
A 		7.2
(-3)
A 		7.9
(-3)
A 		80.8
(1)
A 		110
B 142.4
(3)
A 		10.8
(-2.8)
A 		6.7
(-3)
A 		140.8
(2.9)
A 		136
C 137.6
(3)
A 		13.8
(-2.6)
A 		6.1
(-3)
A 		90.2
(0.8)
A 		132
avr 132.4
(3) 		10.6
(-2.8) 		6.9
(-3) 		103.9
(1.6) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 760
1 2 3 4 5 6 range
A 624.7
(2.3)
P 		171.4
(-2.1)
A 		179.7
(-2)
A 		77.5
(-3)
A 		119.3
(-2.6)
A 		696.2
(3)
P 		619
B 532.3
(0.9)
P 		140.6
(-2.5)
A 		198.8
(-2)
A 		78.9
(-3)
A 		103.6
(-2.8)
A 		777.5
(3)
P 		699
C 500
(1.1)
P 		134.6
(-2)
A 		174.8
(-1.6)
A 		17.2
(-3)
A 		130
(-2)
A 		715.4
(3)
P 		698
avr 552.3
(1.4) 		148.9
(-2.2) 		184.4
(-1.9) 		57.9
(-3) 		117.6
(-2.5) 		729.7
(3) 		672
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 42.7
(3)
A 		1.6
(-3)
A 		2.1
(-2.9)
A 		11.8
(-1.5)
A 		41
B 45.4
(3)
A 		2.7
(-2.8)
A 		1.6
(-3)
A 		30
(0.9)
A 		44
C 45.5
(3)
A 		4
(-2.7)
A 		2.1
(-3)
A 		15.2
(-1.2)
A 		43
avr 44.5
(3) 		2.8
(-2.9) 		1.9
(-3) 		19
(-0.6) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 115.2
(0.8)
P 		61
(-1.3)
A 		39.1
(-2.2)
A 		19.7
(-3)
A 		36
(-2.3)
A 		169.5
(3)
P 		150
B 185.2
(0.7)
P 		46.8
(-2.4)
A 		48.3
(-2.4)
A 		20.9
(-3)
A 		42.1
(-2.5)
A 		289.9
(3)
P 		269
C 185.3
(1.6)
P 		41.1
(-2)
A 		44.5
(-2)
A 		3.5
(-3)
A 		42.1
(-2)
A 		239.5
(3)
P 		236
avr 161.9
(1) 		49.6
(-2) 		44
(-2.2) 		14.7
(-3) 		40.1
(-2.3) 		233
(3) 		218
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189082_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9620
Sequence Type Exemplar sequence
Representative Public ID C06E4.3 NCBI
Target Description C06E4.3 /REP_DB=WormBase Gene ID /WP=CE03951 /TR=Q17726 /GB=AAA82475.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068755(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068755 NCBI Caenorhabditis elegans C06E4.3 (dehydrogenase) mRNA, complete cds. 11/11 None
SNAP00000041906 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7260910:7262012:1 11/11 None
GENEFINDER00000041912 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7260910:7262012:1 11/11 None
C06E4.3 ENSEMBL cdna:known chromosome:CEL140:IV:7260910:7262012:1 gene:C06E4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7260915-7262018(+) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Ensembl C06E4.3
Entrez Gene 182326 Entrez gene
SwissProt Q17726 EMBL-EBI
WormBase CE03951 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82475 Hypothetical protein C06E4.3 [Caenorhabditis elegans] ref|NP_501156.1| C06E4.3 [Caenorhabditis elegans] 1.0E-151
blast CAA91019 Hypothetical protein F02C12.2 [Caenorhabditis elegans] ref|NP_510229.1| F02C12.2 [Caenorhabditis elegans] 1.0E-116
blast CAE74777 Hypothetical protein CBG22607 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 8.0E-53
Sequence
Target Sequence 
>C. ELEGANS:189082_AT
ccacgtcctccggacaagatgcactgatcagtaaaactttggaaaagtttggtcaaatta
atatccttgtgaacaatgccggagcttccatcgctgattcgcagaacagagctggattag
atcaaggaatcgacacatacgagaaagttttgaagctcaatgtgcaaagtgttattgaaa
tgacacagaaaattcgtcctcatttggcaaaaactcgtggagaaattgttaatgtttcaa
gtgttgctgctttgaaatttgcacatgtacgtaatccatactacccactggcaaaagctg
ctctagatcaatacacaagaagtgctgcaattgatttgatttctcaaggaattcgtgtaa
atactgttaatccaggagttgttgcaactggatttcatgagagttgtactggattgtcaa
ctgaagaatctcagaaattctacgataaagtcggcgcaaacaaatctgcaattccatgtg
gattttctggaagaccagagcatattgcaaaggcgattgcctttttggcggaccgtgact
catctgagtacattattggacagaatatcattgctgatggtggaaccagtctggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACGTCCTCCGGACAAGATGCACT 276 271 218 Antisense
AGCTTCCATCGCTGATTCGCAGAAC 16 79 300 Antisense
ATTCGTCCTCATTTGGCAAAAACTC 584 9 409 Antisense
TAATGTTTCAAGTGTTGCTGCTTTG 397 631 447 Antisense
GAAATTTGCACATGTACGTAATCCA 189 363 471 Antisense
GTAATCCATACTACCCACTGGCAAA 539 461 488 Antisense
AAAGCTGCTCTAGATCAATACACAA 194 125 511 Antisense
GTCGGCGCAAACAAATCTGCAATTC 18 473 667 Antisense
ATTGCCTTTTTGGCGGACCGTGACT 466 5 733 Antisense
GCGGACCGTGACTCATCTGAGTACA 163 293 745 Antisense
TGCTGATGGTGGAACCAGTCTGGTT 482 577 789 Antisense
Sequence Source Affymetrix Proprietary Database