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[189077_at] 7TM chemoreceptor, str family

Description F26G5.5 /REP_DB=WormBase Gene ID /WP=CE09702 /TR=O16931 /GB=AAC48038.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 99      4grp_total > 26      6grp_cgc > 89      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 14.5
(-3)
A 		81
(2.8)
A 		83.6
(3)
M 		77.5
(2.5)
A 		69
B 54
(2.3)
A 		54.8
(2.4)
A 		17.5
(-3)
A 		59.2
(3)
A 		42
C 52.8
(-1)
A 		68.8
(0.1)
A 		24.3
(-3)
A 		109.8
(3)
M 		86
avr 40.4
(-3) 		68.2
(1) 		41.8
(-2.8) 		82.2
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 51.7
(1.6)
A 		11.3
(-3)
A 		39.5
(0.2)
A 		32.2
(-0.6)
A 		63.5
(3)
A 		55.8
(2.1)
A 		52
B 26.8
(3)
A 		22.2
(1.1)
A 		16.4
(-1.2)
A 		25.1
(2.3)
A 		12.1
(-3)
A 		21.7
(0.9)
A 		15
C 25
(-0.9)
A 		32.1
(-0)
A 		42.2
(1.2)
A 		7.4
(-3)
A 		57.3
(3)
A 		31.8
(-0.1)
A 		50
avr 34.5
(0.4) 		21.9
(-2.9) 		32.7
(-0.1) 		21.6
(-3) 		44.3
(3) 		36.4
(0.9) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 5.3
(-3)
A 		17.6
(1.4)
A 		21.9
(3)
M 		11.3
(-0.8)
A 		17
B 17.2
(3)
A 		13.5
(1.3)
A 		4.1
(-3)
A 		12.6
(0.9)
A 		13
C 17.5
(1.8)
A 		19.8
(3)
A 		8.5
(-3)
A 		18.5
(2.3)
M 		11
avr 13.3
(-1) 		17
(3) 		11.5
(-3) 		14.1
(-0.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.5
(-0.8)
A 		4
(-3)
A 		8.6
(-1.2)
A 		8.2
(-1.3)
A 		19.2
(3)
A 		13.6
(0.8)
A 		15
B 9.3
(3)
A 		7.4
(0.8)
A 		4
(-3)
A 		6.7
(0.1)
A 		4.9
(-2)
A 		8.1
(1.6)
A 		5
C 9.3
(-0.2)
A 		9.8
(-0.1)
A 		10.7
(0.2)
A 		1.5
(-3)
A 		18.5
(3)
A 		10.7
(0.2)
A 		17
avr 9.4
(-0.3) 		7.1
(-1.9) 		7.8
(-1.4) 		5.5
(-3) 		14.2
(3) 		10.8
(0.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15019
Sequence Type Exemplar sequence
Representative Public ID F26G5.5 NCBI
Target Description F26G5.5 /REP_DB=WormBase Gene ID /WP=CE09702 /TR=O16931 /GB=AAC48038.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071930 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-209) (str-209) mRNA, complete cds. 11/11 None
GENEFINDER00000021547 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4946727:4950838:1 11/11 None
F26G5.5 ENSEMBL cdna:known chromosome:CEL140:V:4948749:4950838:1 gene:F26G5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021534 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4948748-4950838(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-209
Ensembl F26G5.5
Entrez Gene 184998 Entrez gene
SwissProt O16931 EMBL-EBI
WormBase CE09702 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504331 Seven TM Receptor family member (str-209) [Caenorhabditis elegans] gb|AAC48038.1| Seven tm receptor protein 209 [Caenorhabditis elegans] 0.0
blast NP_504331 Seven TM Receptor family member (str-209) [Caenorhabditis elegans] gb|AAC48038.1| Seven tm receptor protein 209 [Caenorhabditis elegans] 1.0E-158
blast NP_504334 Seven TM Receptor family member (str-208) [Caenorhabditis elegans] gb|AAC48036.3| Seven tm receptor protein 208 [Caenorhabditis elegans] 1.0E-109
blast NP_504332 Seven TM Receptor family member (str-207) [Caenorhabditis elegans] gb|AAC48037.1| Seven tm receptor protein 207 [Caenorhabditis elegans] 3.0E-99
blast NP_504334 Seven TM Receptor family member (str-208) [Caenorhabditis elegans] gb|AAC48036.3| Seven tm receptor protein 208 [Caenorhabditis elegans] 1.0E-92
blast NP_504332 Seven TM Receptor family member (str-207) [Caenorhabditis elegans] gb|AAC48037.1| Seven tm receptor protein 207 [Caenorhabditis elegans] 5.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.6E-31
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.6E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504331.1 7 10-32,44-66,86-108,129-151,202-224,248-270,285-307
F26G5.5 7 10-32,44-66,86-108,129-151,202-224,248-270,285-307
GENEFINDER00000021547 5 268-290,310-332,379-401,425-447,462-484
Sequence
Target Sequence 
>C. ELEGANS:189077_AT
tggtcttatttggtggcttgttgcttattttccatgtgctaagcggccaagtactgatga
atatttaagagatagtgtaatgaaagaattcaatttgtcgatcgaagaaaacttgtatgc
cgctccgtatttttatgaggtaaacacagatggaactacagatatatattatccatcctt
catttccatcattcttacgactgttttagttaatatctctgttataaccgtgttttattt
tggcatcaaatgttactcatcactacgtgaacaaggggcactcgtttctcagaatactca
aaaacttcaaaatcagttattctactcattagttattcaaacagttattccattgttttt
gatgcactttccggttgctgccatgtactgtttcacatttttggaaatcgatgttggttc
actaagcggaattgtaacagttacactggcaatctttcccgcaattgatccacttccaac
attgattatggtgaagagttatcggacagcaatccaattctacatttacttgtttttcaa
aactattaccaagatgcttcaaccttctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCTTATTTGGTGGCTTGTTGCT 479 551 438 Antisense
GCTTGTTGCTTATTTTCCATGTGCT 411 307 453 Antisense
TGTATGCCGCTCCGTATTTTTATGA 144 561 551 Antisense
ATATATTATCCATCCTTCATTTCCA 346 19 601 Antisense
CATTTCCATCATTCTTACGACTGTT 146 215 618 Antisense
TGAACAAGGGGCACTCGTTTCTCAG 121 573 705 Antisense
TTTTGATGCACTTTCCGGTTGCTGC 213 675 794 Antisense
GTTGCTGCCATGTACTGTTTCACAT 67 441 811 Antisense
ACAGTTACACTGGCAATCTTTCCCG 46 109 874 Antisense
GACAGCAATCCAATTCTACATTTAC 9 369 942 Antisense
TACCAAGATGCTTCAACCTTCTCAA 685 649 984 Antisense
Sequence Source Affymetrix Proprietary Database