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[189076_at] cuticlin like

Description T21B10.6 /REP_DB=WormBase Gene ID /WP=CE03688 /TR=Q22627 /GB=CAA92696.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cuticlin like
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 14      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 70      6grp_total > 04      4grp_total > 45      6grp_highest_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 378.2
(-0.5)
P 		490.1
(3)
P 		311.8
(-2.6)
P 		298.1
(-3)
P 		192
B 455.2
(3)
P 		375
(0.8)
P 		263.7
(-2.2)
P 		235.3
(-3)
P 		220
C 443.4
(3)
P 		353.1
(-0.6)
P 		290.9
(-3)
P 		327.2
(-1.6)
P 		153
avr 425.6
(3) 		406.1
(2.2) 		288.8
(-2.9) 		286.9
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 298.7
(0.3)
P 		385.7
(3)
P 		201
(-2.8)
P 		297.8
(0.2)
P 		208.9
(-2.5)
P 		194.2
(-3)
P 		192
B 280.3
(0.1)
P 		366.7
(3)
P 		229.8
(-1.5)
P 		214.5
(-2)
P 		273
(-0.1)
P 		185
(-3)
P 		182
C 393.9
(3)
P 		219.5
(-2)
P 		336.5
(1.3)
P 		234.4
(-1.6)
P 		315
(0.7)
P 		185.5
(-3)
P 		208
avr 324.3
(3) 		324
(3) 		255.8
(-0) 		248.9
(-0.3) 		265.6
(0.4) 		188.2
(-3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 137.7
(3)
P 		106.4
(1)
P 		81.5
(-0.6)
P 		43.6
(-3)
P 		94
B 145.1
(3)
P 		92.6
(-0.3)
P 		61.1
(-2.3)
P 		50.2
(-3)
P 		95
C 146.8
(3)
P 		101.5
(0)
P 		101.4
(0)
P 		55.2
(-3)
P 		92
avr 143.2
(3) 		100.2
(0.2) 		81.3
(-1) 		49.7
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 55.1
(-2.3)
P 		137.2
(3)
P 		43.8
(-3)
P 		75.5
(-1)
P 		63
(-1.8)
P 		47.3
(-2.8)
P 		93
B 97.5
(0.8)
P 		122.1
(3)
P 		55.8
(-3)
P 		56.8
(-2.9)
P 		110.9
(2)
P 		69
(-1.8)
P 		66
C 146
(3)
P 		67
(-1.8)
P 		85.7
(-0.7)
P 		47.1
(-3)
P 		101.9
(0.3)
P 		62.1
(-2.1)
P 		99
avr 99.5
(1.9) 		108.8
(3) 		61.8
(-2.7) 		59.8
(-3) 		91.9
(0.9) 		59.5
(-3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189076_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3575
Sequence Type Exemplar sequence
Representative Public ID T21B10.6 NCBI
Target Description T21B10.6 /REP_DB=WormBase Gene ID /WP=CE03688 /TR=Q22627 /GB=CAA92696.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cuticlin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063503(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063503 NCBI Caenorhabditis elegans T21B10.6 (T21B10.6) mRNA, complete cds. 11/11 None
SNAP00000044368 ENSEMBL cdna:SNAP chromosome:CEL140:II:8942798:8944657:-1 11/11 None
GENEFINDER00000044370 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8942798:8947494:-1 11/11 None
T21B10.6.1 ENSEMBL cdna:known chromosome:CEL140:II:8942564:8947598:-1 gene:T21B10.6 11/11 None
T21B10.6.2 ENSEMBL cdna:known chromosome:CEL140:II:8942564:8947599:-1 gene:T21B10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8942794-8947491(-) 100.0 100.0
Public Domain and Genome References
Gene Title cuticlin like
Ensembl T21B10.6
Entrez Gene 174426 Entrez gene
SwissProt Q22627 EMBL-EBI
WormBase CE33835 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92696 Hypothetical protein T21B10.6 [Caenorhabditis elegans] ref|NP_495904.2| T21B10.6 [Caenorhabditis elegans] 0.0
blast CAE59766 Hypothetical protein CBG03218 [Caenorhabditis briggsae] 1.0E-149
blast CAA92696 Hypothetical protein T21B10.6 [Caenorhabditis elegans] ref|NP_495904.2| T21B10.6 [Caenorhabditis elegans] 1.0E-144
blast CAE59766 Hypothetical protein CBG03218 [Caenorhabditis briggsae] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.2E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495904.2 1 352-374
T21B10.6.1 1 352-374
T21B10.6.2 1 352-374
SNAP00000044368 1 284-301
GENEFINDER00000044370 1 352-374
Sequence
Target Sequence 
>C. ELEGANS:189076_AT
gacgtttatcattcatggcagtgccaaaatgtttatgagtcatgcataatgatcgaaaac
tgtgagcttgttggtggtgaagaaactcacgaagtaatcgattcatctggatgttcaaaa
catgaatcaataatgccacaacttgaatatcacaatcgaactcatgtgggaacatctgtt
aaagtatttggagtatctcatacttcaattgtatattttgcatgtcaagtccgtcttcat
ccacaacttccaactggggaatgccctaaaccaaaatgtgatttgatgaggaggaaaaga
gaagactcatctcaatttccatccattgatgttcgaagtcaaaatctagaaatatctcaa
ttgatcaacatcacatcatctacaatgactccacacccaacagaaccaccaattcaacac
acatgtccggatatccacgtggaaactgaatcaattgaagaggcttcagaatcgaaggca
cttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTTATCATTCATGGCAGTGCC 317 377 490 Antisense
GAAAACTGTGAGCTTGTTGGTGGTG 627 353 544 Antisense
TTTGCATGTCAAGTCCGTCTTCATC 191 667 706 Antisense
CATCCACAACTTCCAACTGGGGAAT 253 209 727 Antisense
GGGGAATGCCCTAAACCAAAATGTG 425 487 745 Antisense
AGAAGACTCATCTCAATTTCCATCC 282 75 789 Antisense
ATTTCCATCCATTGATGTTCGAAGT 282 17 804 Antisense
ACATCATCTACAATGACTCCACACC 688 105 862 Antisense
AACCACCAATTCAACACACATGTCC 641 147 893 Antisense
ACACATGTCCGGATATCCACGTGGA 425 111 908 Antisense
GAGGCTTCAGAATCGAAGGCACTTG 536 405 949 Antisense
Sequence Source Affymetrix Proprietary Database