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[189075_at] C-type lectin

Description T25E12.8 /REP_DB=WormBase Gene ID /WP=CE16469 /TR=O45822 /GB=CAB04826.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin
Cluster 6grp_total > 62      4grp_total > 40      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 10
(-3)
A 		18.2
(-1.5)
A 		43.8
(3)
A 		35.8
(1.6)
A 		34
B 44.1
(1.2)
A 		59.9
(3)
M 		60.1
(3)
A 		8.2
(-3)
A 		52
C 48.7
(0.2)
A 		27.2
(-3)
A 		29.2
(-2.7)
A 		67.3
(3)
A 		40
avr 34.3
(-3) 		35.1
(-2.5) 		44.4
(3) 		37.1
(-1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 6.6
(-2.7)
A 		54.9
(3)
P 		51.8
(2.6)
M 		51.5
(2.6)
A 		24.4
(-0.6)
A 		4.1
(-3)
A 		51
B 46.5
(-1)
P 		35.1
(-3)
A 		69
(3)
A 		54
(0.3)
P 		51
(-0.2)
A 		52.1
(0)
A 		34
C 30.1
(-2.6)
A 		29.1
(-3)
A 		39.7
(1.3)
A 		37.5
(0.4)
A 		43.8
(3)
P 		31.5
(-2)
A 		15
avr 27.7
(-3) 		39.7
(-0.2) 		53.5
(3) 		47.7
(1.7) 		39.7
(-0.2) 		29.2
(-2.7) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.6
(-3)
A 		3.9
(-2.8)
A 		11.5
(3)
A 		5.2
(-1.8)
A 		8
B 14.1
(2.7)
A 		14.8
(3)
M 		13.9
(2.6)
A 		1.7
(-3)
A 		13
C 16.1
(3)
A 		7.8
(-3)
A 		10.2
(-1.3)
A 		11.3
(-0.5)
A 		8
avr 11.3
(2.4) 		8.8
(-0.2) 		11.9
(3) 		6.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		19.5
(3)
P 		11.3
(0.3)
M 		13.1
(0.9)
A 		7.4
(-0.9)
A 		1
(-3)
A 		19
B 16.2
(0)
P 		11.7
(-3)
A 		16.7
(0.3)
A 		14.3
(-1.3)
P 		20.7
(3)
A 		19.4
(2.1)
A 		9
C 11.2
(0.3)
A 		8.9
(-1.7)
A 		10.1
(-0.7)
A 		7.5
(-3)
A 		14.2
(3)
P 		10.5
(-0.3)
A 		7
avr 9.5
(-3) 		13.4
(2.1) 		12.7
(1.2) 		11.6
(-0.3) 		14.1
(3) 		10.3
(-2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189075_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13626
Sequence Type Exemplar sequence
Representative Public ID T25E12.8 NCBI
Target Description T25E12.8 /REP_DB=WormBase Gene ID /WP=CE16469 /TR=O45822 /GB=CAB04826.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074833 NCBI Caenorhabditis elegans C-type LECtin family member (clec-34) (clec-34) mRNA, complete cds. 11/11 None
SNAP00000017067 ENSEMBL cdna:SNAP chromosome:CEL140:V:16738924:16739985:1 11/11 None
T25E12.8 ENSEMBL cdna:known chromosome:CEL140:V:16738346:16739985:1 gene:T25E12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16738345-16739985(+) 100.0 100.0
Public Domain and Genome References
Gene Title C-type lectin
Gene Symbol clec-34
Ensembl T25E12.8
Entrez Gene 180116 Entrez gene
SwissProt O45822 EMBL-EBI
WormBase CE16469 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04826 Hypothetical protein T25E12.8 [Caenorhabditis elegans] ref|NP_507234.1| C-type LECtin family member (clec-34) [Caenorhabditis elegans] 0.0
blast CAB04826 Hypothetical protein T25E12.8 [Caenorhabditis elegans] ref|NP_507234.1| C-type LECtin family member (clec-34) [Caenorhabditis elegans] 1.0E-129
blast CAE17834 Hypothetical protein F49A5.9 [Caenorhabditis elegans] ref|NP_001023952.1| C-type LECtin family member (clec-32) [Caenorhabditis elegans] 1.0E-104
blast CAB04419 Hypothetical protein F49A5.7 [Caenorhabditis elegans] ref|NP_507262.2| C-type LECtin family member (clec-33) [Caenorhabditis elegans] 1.0E-102
blast CAE17834 Hypothetical protein F49A5.9 [Caenorhabditis elegans] ref|NP_001023952.1| C-type LECtin family member (clec-32) [Caenorhabditis elegans] 6.0E-77
blast CAB04419 Hypothetical protein F49A5.7 [Caenorhabditis elegans] ref|NP_507262.2| C-type LECtin family member (clec-33) [Caenorhabditis elegans] 2.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.5E-7
Pfam IPR001304 EMBL-EBI C-type lectin 2.5E-4
Pfam IPR001304 EMBL-EBI C-type lectin 2.5E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507234.1 2 22-44,288-310
T25E12.8 2 22-44,288-310
Sequence
Target Sequence 
>C. ELEGANS:189075_AT
ggacggggttgatttgcgtcggcaaaactactttttcgtgcacttgggatatggaaagtg
ggactacgtcggtctataatagttttgctagcgaatcccctgataacacttatggaaact
gtgtttacttcattattactggaacacaagctggacaatggaaaagtggtctatgcaaca
tgacgatgagtttcgtgtgtgaacttcctccaactgttcatgacaagaattgcatcaaca
actacaacaatcactgttaccttcgctacgatgattccgacactgtcgttgaagcccagc
ggttctgcaacacaaaatgcgccaacctagtttcaatccactctgccaatgaaaatcgtt
tcattcaaaccatttactatgtggacggatatattgcactaggtgcggtggctcccatca
tcgactacattgtttggatggatggatcaccacagctttataataatattcaagacaatt
cgaatggaacttgtgtgtttatgagaattttgtggggtggtgccggttattggtacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGGGGTTGATTTGCGTCGGCAA 102 523 506 Antisense
AACTACTTTTTCGTGCACTTGGGAT 219 139 531 Antisense
GAAAGTGGGACTACGTCGGTCTATA 665 359 559 Antisense
TAGTTTTGCTAGCGAATCCCCTGAT 428 637 585 Antisense
AGTTTCGTGTGTGAACTTCCTCCAA 503 61 694 Antisense
ACTTCCTCCAACTGTTCATGACAAG 264 103 708 Antisense
TCACTGTTACCTTCGCTACGATGAT 207 627 756 Antisense
TTCCGACACTGTCGTTGAAGCCCAG 304 695 780 Antisense
GTTTCAATCCACTCTGCCAATGAAA 550 447 835 Antisense
TATTGCACTAGGTGCGGTGGCTCCC 43 665 897 Antisense
GGGTGGTGCCGGTTATTGGTACACT 436 497 1020 Antisense
Sequence Source Affymetrix Proprietary Database