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[189073_at] dehydrogenase

Description C06E4.4 /REP_DB=WormBase Gene ID /WP=CE03952 /TR=Q17725 /GB=AAA82474.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_total > 40      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 7.1
(-1.1)
A 		2.4
(-3)
A 		17
(3)
A 		3
(-2.8)
A 		15
B 28.1
(3)
A 		10.4
(-1.3)
A 		3.5
(-3)
A 		4
(-2.9)
A 		25
C 5.2
(-2.9)
A 		17
(-1.7)
A 		4.7
(-3)
A 		61.3
(3)
A 		57
avr 13.5
(-0.9) 		9.9
(-2.4) 		8.4
(-3) 		22.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 7
(-2.7)
A 		30.9
(2)
A 		23.5
(0.5)
A 		6.3
(-2.9)
A 		5.7
(-3)
A 		36.2
(3)
A 		31
B 27.5
(2.5)
A 		29.7
(3)
A 		9.9
(-1.3)
A 		16.7
(0.2)
A 		6.8
(-2)
A 		2.1
(-3)
A 		28
C 9.5
(-2.3)
A 		6.7
(-2.8)
A 		5.2
(-3)
A 		42
(3)
A 		7.7
(-2.6)
A 		6.3
(-2.8)
A 		37
avr 14.7
(0.1) 		22.4
(3) 		12.9
(-0.6) 		21.7
(2.7) 		6.7
(-3) 		14.9
(0.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.6
(0.3)
A 		0.5
(-2.9)
A 		4.4
(3)
A 		0.4
(-3)
A 		4
B 8.9
(3)
A 		2.6
(-1.7)
A 		0.8
(-3)
A 		0.8
(-3)
A 		8
C 1.7
(-3)
A 		4.9
(-0.8)
A 		1.7
(-3)
A 		10.3
(3)
A 		9
avr 4.4
(3) 		2.7
(-1.9) 		2.3
(-3) 		3.8
(1.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.3
(-3)
A 		11
(3)
A 		5.1
(-0.6)
A 		1.6
(-2.8)
A 		1.7
(-2.8)
A 		8.8
(1.6)
A 		10
B 9.6
(2.8)
A 		9.9
(3)
A 		2.4
(-1.9)
A 		4.4
(-0.6)
A 		2.8
(-1.7)
A 		0.8
(-3)
A 		9
C 3.5
(-1.1)
A 		2.1
(-2.3)
A 		1.3
(-3)
A 		8.4
(3)
A 		2.5
(-2)
A 		2.1
(-2.3)
A 		7
avr 4.8
(-0.2) 		7.7
(3) 		2.9
(-2.3) 		4.8
(-0.2) 		2.3
(-3) 		3.9
(-1.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189073_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9427
Sequence Type Exemplar sequence
Representative Public ID C06E4.4 NCBI
Target Description C06E4.4 /REP_DB=WormBase Gene ID /WP=CE03952 /TR=Q17725 /GB=AAA82474.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068754(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068754 NCBI Caenorhabditis elegans C06E4.4 (dehydrogenase) mRNA, complete cds. 11/11 None
SNAP00000041905 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7258637:7259521:1 11/11 None
GENEFINDER00000041913 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7258637:7260130:1 11/11 None
C06E4.4 ENSEMBL cdna:known chromosome:CEL140:IV:7258637:7259521:1 gene:C06E4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7258642-7259527(+) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Ensembl C06E4.4
Entrez Gene 182327 Entrez gene
SwissProt Q17725 EMBL-EBI
WormBase CE03952 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82475 Hypothetical protein C06E4.3 [Caenorhabditis elegans] ref|NP_501156.1| C06E4.3 [Caenorhabditis elegans] 1.0E-94
blast AAA82475 Hypothetical protein C06E4.3 [Caenorhabditis elegans] ref|NP_501156.1| C06E4.3 [Caenorhabditis elegans] 2.0E-94
blast CAA91019 Hypothetical protein F02C12.2 [Caenorhabditis elegans] ref|NP_510229.1| F02C12.2 [Caenorhabditis elegans] 8.0E-87
blast CAA91019 Hypothetical protein F02C12.2 [Caenorhabditis elegans] ref|NP_510229.1| F02C12.2 [Caenorhabditis elegans] 1.0E-86
blast AAA82474 Hypothetical protein C06E4.4 [Caenorhabditis elegans] ref|NP_501155.1| C06E4.4 [Caenorhabditis elegans] 1.0E-81
blast CAE74777 Hypothetical protein CBG22607 [Caenorhabditis briggsae] 5.0E-79
blast CAE74777 Hypothetical protein CBG22607 [Caenorhabditis briggsae] 7.0E-79
blast AAA82475 Hypothetical protein C06E4.3 [Caenorhabditis elegans] ref|NP_501156.1| C06E4.3 [Caenorhabditis elegans] 3.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 6.7E-13
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 9.4E-38
Sequence
Target Sequence 
>C. ELEGANS:189073_AT
atgtctggtcgattttctggtaaagacgcaatcatcaccggttcctcttttgaaattgga
agagcaactgctcttctttttgccaaagaaggagaaaaaagtgtaattgaaatgactcag
aagattcacccgcatcttgcaaaaactcatggagaaattttcaatgtctccagcattgta
gctttgaagtttggctcgggccgaggcccatactacccattggcaaaagctgctcttgat
caatacataagaagtgctgcaattgatttgatttctgaagggattcgagtaaacaccgtg
aatccaggagttgtggcgactggattcatggaagttgccacaggattatcttccgagcaa
tctcagacgttctacgataacgttggttctaatccatctgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTGGTCGATTTTCTGGTAAAG 88 49 13 Antisense
TAAAGACGCAATCATCACCGGTTCC 243 641 33 Antisense
ATCACCGGTTCCTCTTTTGAAATTG 27 3 46 Antisense
ATGACTCAGAAGATTCACCCGCATC 363 45 124 Antisense
CACCCGCATCTTGCAAAAACTCATG 188 201 139 Antisense
AATGTCTCCAGCATTGTAGCTTTGA 602 163 175 Antisense
TTGAAGTTTGGCTCGGGCCGAGGCC 321 651 196 Antisense
GTTGTGGCGACTGGATTCATGGAAG 282 437 322 Antisense
GTTGCCACAGGATTATCTTCCGAGC 202 441 346 Antisense
CCGAGCAATCTCAGACGTTCTACGA 534 263 365 Antisense
AACGTTGGTTCTAATCCATCTGCAA 509 143 391 Antisense
Sequence Source Affymetrix Proprietary Database