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[189071_at]

Description C05B5.5 /REP_DB=WormBase Gene ID /WP=CE00051 /TR=SW:P34293 /GB=CAA83593.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=EGF repeats
Cluster 6grp_total > 70      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 32.6
(3)
A 		3.6
(-3)
A 		6.8
(-2.3)
A 		8
(-2.1)
A 		29
B 27.5
(3)
A 		2.8
(-3)
A 		4.8
(-2.5)
A 		13.1
(-0.5)
A 		25
C 7.6
(-3)
A 		7.5
(-3)
A 		9.7
(-2.5)
A 		31.6
(3)
A 		24
avr 22.6
(3) 		4.6
(-3) 		7.1
(-2.2) 		17.6
(1.3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 2.9
(-3)
A 		13.9
(-1.8)
A 		37.3
(0.9)
A 		56.3
(3)
A 		9.2
(-2.3)
A 		38.8
(1)
A 		53
B 9.6
(0.2)
A 		15.3
(3)
A 		9.2
(-0.1)
A 		13.9
(2.3)
A 		4.4
(-2.5)
A 		3.3
(-3)
A 		12
C 12.1
(-1)
A 		17.3
(0.9)
A 		6.5
(-3)
A 		23.1
(3)
A 		8.2
(-2.4)
A 		9.7
(-1.8)
A 		17
avr 8.2
(-2.8) 		15.5
(-0.9) 		17.7
(-0.4) 		31.1
(3) 		7.3
(-3) 		17.3
(-0.5) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.9
(3)
A 		0.8
(-3)
A 		1.8
(-2.5)
A 		1.2
(-2.8)
A 		11
B 8.8
(3)
A 		0.7
(-3)
A 		1.1
(-2.7)
A 		2.8
(-1.4)
A 		8
C 2.5
(-2.3)
A 		2.1
(-3)
A 		3.4
(-0.6)
A 		5.3
(3)
A 		3
avr 7.7
(3) 		1.2
(-3) 		2.1
(-2.2) 		3.1
(-1.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.5
(-3)
A 		4.9
(-1.1)
A 		8.1
(0.3)
A 		14.3
(3)
A 		2.8
(-2)
A 		9.5
(0.9)
A 		14
B 3.3
(0.2)
A 		5.1
(3)
A 		2.2
(-1.5)
A 		3.7
(0.8)
A 		1.8
(-2.1)
A 		1.2
(-3)
A 		4
C 4.5
(1.7)
A 		5.3
(3)
A 		1.7
(-3)
A 		4.6
(1.8)
A 		2.7
(-1.3)
A 		3.2
(-0.5)
A 		4
avr 2.8
(-2.5) 		5.1
(0.2) 		4
(-1.1) 		7.5
(3) 		2.4
(-3) 		4.6
(-0.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7470
Sequence Type Exemplar sequence
Representative Public ID C05B5.5 NCBI
Target Description C05B5.5 /REP_DB=WormBase Gene ID /WP=CE00051 /TR=SW:P34293 /GB=CAA83593.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=EGF repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025972, NM_066818
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000026746 ENSEMBL cdna:SNAP chromosome:CEL140:III:10004355:10004821:1 None
GENEFINDER00000026764 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10004355:10004821:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025972 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026755 1/11 Cross Hyb Matching Probes None
SNAP00000026745 1/11 Cross Hyb Matching Probes None
C05B5.9 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10001286-10004817(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast S43572 C05B5.5 protein (clone C05B5) - Caenorhabditis elegans 4.0E-60
blast CAE64965 Hypothetical protein CBG09799 [Caenorhabditis briggsae] 1.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 9.4E-22
Sequence
Target Sequence 
>C. ELEGANS:189071_AT
ggaggtctttgcacaaccaatacgcaatgcccaaatggatatcaatgtgttaatcggaaa
tgctccaggaatagtcgtcatttcaatgatctgccatgtgtcactgaaactgaatgtcca
ccaggaaccagatgtatcaacggagtctgtactggcattgataacaagacggatagagcc
agcatcagtcaacatgaacagtctcttggtaagtcatccctatcttcttttattctcagc
tcaactatatttcagatcgtttccctccttgttctcggggtttcaagtcaaatcgacgat
aaccaacccgaattgcaacgaacattcttcggaattatcggatcagccaaagcaaaggca
tgcagcaccaacctcgagtgtggaaacaaaggtatttgtgtagatggagaatgccttgtc
gataacggattgggaggctattgctcgactagtacacaatgtccaactggctatcaatgt
attgatggaaaatgcaagactaaacgtcatttccttgctccaccatgtgtcgctgaatgt
ccaccaggaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTCTTTGCACAACCAATACGC 683 513 1171 Antisense
GGATAGAGCCAGCATCAGTCAACAT 15 511 1341 Antisense
ACAGTCTCTTGGTAAGTCATCCCTA 608 105 1368 Antisense
CTATCTTCTTTTATTCTCAGCTCAA 206 225 1390 Antisense
AACTATATTTCAGATCGTTTCCCTC 14 137 1413 Antisense
TGCAGCACCAACCTCGAGTGTGGAA 244 577 1531 Antisense
GAGAATGCCTTGTCGATAACGGATT 506 389 1577 Antisense
GGAGGCTATTGCTCGACTAGTACAC 573 513 1603 Antisense
AAGACTAAACGTCATTTCCTTGCTC 60 135 1666 Antisense
GCTCCACCATGTGTCGCTGAATGTC 585 297 1687 Antisense
GTCGCTGAATGTCCACCAGGAACCA 23 475 1699 Antisense
Sequence Source Affymetrix Proprietary Database