[Home] | [Total List]

[189070_at] coiled-coil

Description T15H9.2 /REP_DB=WormBase Gene ID /WP=CE01665 /TR=SW:Q10006 /GB=CAA87415.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=coiled-coil
Cluster 6grp_total > 86      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 36.1
(-3)
A 		78.6
(0.1)
P 		55.7
(-1.6)
P 		118.8
(3)
P 		83
B 51.8
(-3)
A 		80.1
(-0.2)
A 		111.5
(3)
P 		77.4
(-0.4)
P 		60
C 53.4
(-3)
A 		81.3
(-0.8)
P 		71.2
(-1.6)
P 		131.2
(3)
P 		78
avr 47.1
(-3) 		80
(0.2) 		79.5
(0.1) 		109.1
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 44.4
(-3)
A 		54.4
(-2.5)
A 		52.5
(-2.6)
A 		100
(-0.5)
P 		72.7
(-1.7)
P 		176.2
(3)
P 		132
B 29.4
(-3)
A 		36.4
(-2.5)
A 		29.2
(-3)
A 		47.3
(-1.9)
A 		79.2
(0.1)
P 		125.1
(3)
P 		96
C 26.5
(-3)
A 		53.9
(-1.2)
A 		50.1
(-1.4)
A 		76.9
(0.4)
A 		115.2
(3)
P 		115.4
(3)
P 		89
avr 33.4
(-3) 		48.2
(-2.2) 		43.9
(-2.4) 		74.7
(-0.7) 		89
(0.2) 		138.9
(3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.1
(-3)
A 		17.1
(2.6)
P 		14.6
(-0.9)
P 		17.4
(3)
P 		4
B 16.5
(-3)
A 		19.8
(-0.9)
A 		25.8
(3)
P 		16.5
(-3)
P 		9
C 17.7
(-3)
A 		23.4
(1.8)
P 		24.8
(3)
P 		22.1
(0.7)
P 		7
avr 15.8
(-3) 		20.1
(1.4) 		21.7
(3) 		18.7
(-0.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 8.2
(-3)
A 		19.3
(-1.1)
A 		11.4
(-2.4)
A 		25.4
(-0)
P 		21.9
(-0.6)
P 		42.9
(3)
P 		35
B 10.2
(-2.5)
A 		12.1
(-2.2)
A 		7.1
(-3)
A 		12.5
(-2.2)
A 		32.2
(0.8)
P 		46.7
(3)
P 		40
C 9.8
(-3)
A 		16.4
(-1.6)
A 		12.8
(-2.4)
A 		15.5
(-1.8)
A 		37.3
(2.7)
P 		38.6
(3)
P 		29
avr 9.4
(-3) 		15.9
(-1.8) 		10.4
(-2.8) 		17.8
(-1.5) 		30.5
(0.8) 		42.7
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189070_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3211
Sequence Type Exemplar sequence
Representative Public ID T15H9.2 NCBI
Target Description T15H9.2 /REP_DB=WormBase Gene ID /WP=CE01665 /TR=SW:Q10006 /GB=CAA87415.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=coiled-coil
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063670 NCBI Caenorhabditis elegans T15H9.2 (coiled-coil) mRNA, complete cds. 11/11 None
SNAP00000036798 ENSEMBL cdna:SNAP chromosome:CEL140:II:9615914:9617034:-1 11/11 None
GENEFINDER00000036808 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9615768:9617034:-1 11/11 None
T15H9.2 ENSEMBL cdna:known chromosome:CEL140:II:9615914:9617034:-1 gene:T15H9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9615910-9617031(-) 98.95 100.0
Public Domain and Genome References
Gene Title coiled-coil
Ensembl T15H9.2
Entrez Gene 188538 Entrez gene
SwissProt Q10006 EMBL-EBI
WormBase CE01665 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87415 Hypothetical protein T15H9.2 [Caenorhabditis elegans] ref|NP_496071.1| T15H9.2 [Caenorhabditis elegans] sp|Q10006|YRY2_CAEEL Hypothetical protein T15H9.2 in chromosome II 1.0E-138
blast CAE63495 Hypothetical protein CBG07968 [Caenorhabditis briggsae] 3.0E-81
blast CAE63495 Hypothetical protein CBG07968 [Caenorhabditis briggsae] 4.0E-81
Sequence
Target Sequence 
>C. ELEGANS:189070_AT
ttccgcgatgagctgcaggcacaaggattatgccccgttgggagtgctggaatcgatccg
aaatccaagttccgcacagaatatcggcgtattgtcaatgctaacacaattctaaccgac
gtgcttcgtcttcaacagaaagagggcgagtggttgaaaaatgccagtggacttttggag
tatgatattcagtcccttcatgctcgacgcgatcaccttgacaatgccgtggagcagttg
aagagccaattgagccggcttgattcgagcgtcgcaattctgaaatcccaacaaatggcc
gtgaagagtgttttggagttgagagaggacgaatatctcgctgatgatgcggattccaat
ttgcctgatgaatttttgaaatttagcaaaatcagcaagttatgtgccgcttctctccaa
tcgtacgaaaatgtaaaaaaacgaaacgaagaaatgcaaaaagagctgattgccgaacga
aatcggcaacgaaagcttcacgacgcgacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGCGATGAGCTGCAGGCACAAG 192 699 142 Antisense
ATTATGCCCCGTTGGGAGTGCTGGA 578 9 168 Antisense
TCGATCCGAAATCCAAGTTCCGCAC 358 603 194 Antisense
TCTAACCGACGTGCTTCGTCTTCAA 87 613 252 Antisense
TATGATATTCAGTCCCTTCATGCTC 697 655 322 Antisense
ACGCGATCACCTTGACAATGCCGTG 181 89 348 Antisense
ATTGAGCCGGCTTGATTCGAGCGTC 218 5 390 Antisense
GAGCGTCGCAATTCTGAAATCCCAA 418 387 408 Antisense
GATGCGGATTCCAATTTGCCTGATG 312 415 487 Antisense
ATCAGCAAGTTATGTGCCGCTTCTC 362 27 532 Antisense
AACGAAAGCTTCACGACGCGACAAT 705 143 629 Antisense
Sequence Source Affymetrix Proprietary Database