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[189068_at] 7TM receptor

Description C33A12.11 /REP_DB=WormBase Gene ID /WP=CE05357 /TR=Q18366 /GB=CAA92795.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 02      4grp_total > 20      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 61.7
(1.3)
M
69.1
(2.6)
A
36.7
(-3)
A
71.5
(3)
P
35
B 71.2
(3)
P
10.3
(-3)
A
34.8
(-0.6)
A
69.4
(2.8)
P
61
C 51.8
(-2.3)
A
92.3
(1.9)
P
45
(-3)
A
103.3
(3)
P
58
avr 61.6
(0.2)
57.2
(-0.4)
38.8
(-3)
81.4
(3)
43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 64.7
(1.4)
A
35
(-1)
A
84.6
(3)
P
71
(1.9)
A
67.1
(1.6)
M
10.8
(-3)
A
74
B 53.6
(0.1)
A
81
(3)
A
31.3
(-2.3)
A
24.2
(-3)
A
79
(2.8)
P
52
(-0.1)
A
57
C 36.8
(-0.8)
A
76.1
(3)
P
38.3
(-0.7)
A
49.3
(0.4)
A
37.8
(-0.7)
P
14.1
(-3)
A
62
avr 51.7
(1.1)
64
(3)
51.4
(1)
48.2
(0.5)
61.3
(2.6)
25.6
(-3)
38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 22.5
(3)
M
15
(-0.5)
A
9.6
(-3)
A
10.5
(-2.6)
P
13
B 22.7
(3)
P
2.5
(-3)
A
8.1
(-1.3)
A
14.8
(0.7)
P
20
C 17.1
(-2.2)
A
26.5
(3)
P
15.7
(-3)
A
17.4
(-2.1)
P
11
avr 20.8
(3)
14.7
(-0.8)
11.1
(-3)
14.2
(-1.1)
10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 11.9
(0.2)
A
12.5
(0.4)
A
18.4
(2.4)
P
18
(2.2)
A
20.3
(3)
M
2.6
(-3)
A
18
B 18.6
(-0.2)
A
26.9
(1.8)
A
7.6
(-2.7)
A
6.4
(-3)
A
32.1
(3)
P
19.4
(0)
A
26
C 13.6
(-0.1)
A
23.2
(3)
P
9.8
(-1.3)
A
9.9
(-1.3)
A
12.2
(-0.6)
P
4.7
(-3)
A
19
avr 14.7
(-0.2)
20.9
(2.7)
11.9
(-1.6)
11.4
(-1.8)
21.5
(3)
8.9
(-3)
13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189068_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8882
Sequence Type Exemplar sequence
Representative Public ID C33A12.11 NCBI
Target Description C33A12.11 /REP_DB=WormBase Gene ID /WP=CE05357 /TR=Q18366 /GB=CAA92795.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069277(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_069277 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-3) (sru-3) mRNA, complete cds. 11/11 None
C33A12.11 ENSEMBL cdna:known chromosome:CEL140:IV:9496583:9497865:1 gene:C33A12.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009037 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9496588-9497871(+) 96.44 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol sru-3
Ensembl C33A12.11
Entrez Gene 183144 Entrez gene
SwissProt Q18366 EMBL-EBI
WormBase CE05357 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92795 Hypothetical protein C33A12.11 [Caenorhabditis elegans] ref|NP_501678.1| Serpentine Receptor, class U family member (sru-3) [Caenorhabditis elegans] 1.0E-176
blast CAE74030 Hypothetical protein CBG21679 [Caenorhabditis briggsae] 1.0E-115
blast CAE74032 Hypothetical protein CBG21682 [Caenorhabditis briggsae] 6.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 7.7E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501678.1 6 27-49,69-91,121-143,155-177,207-229,250-272
C33A12.11 6 27-49,69-91,121-143,155-177,207-229,250-272
Sequence
Target Sequence
>C. ELEGANS:189068_AT
gttgttcccattctaattgttctatttcccaacacacataactcgataaacaccaagatt
attcacatcggagtacccattctatttttatatccaatttgttttactttttattttatc
cctgctcttggaatatgcagacaatttacgttccctttcccatttggatctgtttatatt
tatcactatcagtcagcttttgggctcaaaaactcatttttccatctttacaatattttg
ttctggatgacagtttctattggagcaaatgtaattttattctgtagagttgtgaaggcg
aaatctcaattaatgaataaaagcaaaacttcatatagagcagaattttcaataactatc
actacaatatcaatggttgcttcgtatgttatcaatggaacttttttgattgcttatatt
tcgttttctggaactaattcctatatatcttatgctgaagtagttcgtccatttggtaat
gatattcaagcatgtgtagttacgtggctattctacttaactcatcctgcattcaga


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GTTGTTCCCATTCTAATTGTTCTAT 30 439 415 Antisense
GTTCTATTTCCCAACACACATAACT 350 443 433 Antisense
CACATCGGAGTACCCATTCTATTTT 535 193 478 Antisense
TTACTTTTTATTTTATCCCTGCTCT 345 683 518 Antisense
ATGCAGACAATTTACGTTCCCTTTC 322 43 549 Antisense
TTCCCTTTCCCATTTGGATCTGTTT 40 691 565 Antisense
ATCACTATCAGTCAGCTTTTGGGCT 710 27 596 Antisense
ATCAATGGTTGCTTCGTATGTTATC 676 25 783 Antisense
GATTGCTTATATTTCGTTTTCTGGA 615 433 822 Antisense
TACGTGGCTATTCTACTTAACTCAT 173 649 915 Antisense
CTACTTAACTCATCCTGCATTCAGA 163 227 927 Antisense
Sequence Source Affymetrix Proprietary Database