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[189067_s_at] monooxygenase

Description C04F1.2 /REP_DB=WormBase Gene ID /WP=CE17365 /TR=P91458 /GB=AAC16983.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=monooxygenase
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 73      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 64      6grp_total > 70      4grp_total > 04      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 661
1 2 3 4 range
A 707
(3)
P 		521.2
(-2.4)
P 		502.2
(-3)
P 		690.7
(2.5)
P 		205
B 662
(-1.9)
P 		688.8
(-1.7)
P 		553.1
(-3)
P 		1163.2
(3)
P 		610
C 714
(-1)
P 		591.4
(-3)
P 		707.2
(-1.1)
P 		954.4
(3)
P 		363
avr 694.3
(-1.2) 		600.5
(-2.8) 		587.5
(-3) 		936.1
(3) 		349

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 840
1 2 3 4 5 6 range
A 518
(-3)
P 		683.1
(-1.8)
P 		954.7
(0.1)
P 		1358.4
(3)
P 		567.4
(-2.6)
P 		763.2
(-1.2)
P 		840
B 577.6
(-3)
P 		769.9
(-0.3)
P 		970.8
(2.6)
P 		1000.9
(3)
P 		679
(-1.6)
P 		802.3
(0.2)
P 		423
C 728
(-2.4)
P 		668.7
(-3)
P 		930.7
(-0.3)
P 		1252.2
(3)
P 		841.5
(-1.2)
P 		964.1
(0)
P 		584
avr 607.9
(-3) 		707.2
(-2) 		952.1
(0.5) 		1203.8
(3) 		696
(-2.1) 		843.2
(-0.6) 		596
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 257.4
(3)
P 		113.1
(-2.5)
P 		131.3
(-1.8)
P 		101.1
(-3)
P 		156
B 211.1
(1.2)
P 		170.1
(-0.9)
P 		128.2
(-3)
P 		247.9
(3)
P 		120
C 236.4
(2.3)
P 		170
(-2.4)
P 		246.5
(3)
P 		160.9
(-3)
P 		86
avr 235
(3) 		151.1
(-3) 		168.7
(-1.7) 		170
(-1.6) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 95.5
(-3)
P 		243
(0.6)
P 		207.9
(-0.3)
P 		344.5
(3)
P 		171.2
(-1.2)
P 		185.8
(-0.8)
P 		249
B 201
(-3)
P 		256.3
(0.4)
P 		235.7
(-0.9)
P 		265.1
(0.9)
P 		275.9
(1.6)
P 		299.2
(3)
P 		98
C 269.8
(0.3)
P 		204
(-3)
P 		236.9
(-1.3)
P 		251.8
(-0.6)
P 		272.3
(0.5)
P 		322.7
(3)
P 		119
avr 188.8
(-3) 		234.4
(-0.2) 		226.8
(-0.7) 		287.1
(3) 		239.8
(0.1) 		269.2
(1.9) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189067_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1843
Sequence Type Exemplar sequence
Representative Public ID C04F1.2 NCBI
Target Description C04F1.2 /REP_DB=WormBase Gene ID /WP=CE17365 /TR=P91458 /GB=AAC16983.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=monooxygenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059265 NCBI Caenorhabditis elegans T19B4.1 (monooxygenase) mRNA, complete cds. 11/11 None
GENEFINDER00000002310 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5711318:5713689:1 10/11 None
GENEFINDER00000019543 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5702161:5705556:1 10/11 None
T19B4.1 ENSEMBL cdna:known chromosome:CEL140:I:5702157:5705575:1 gene:T19B4.1 11/11 None
C04F1.2 ENSEMBL cdna:known chromosome:CEL140:I:5711318:5713708:1 gene:C04F1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002302 4/11 Cross Hyb Matching Probes None
SNAP00000002303 7/11 Cross Hyb Matching Probes None
SNAP00000019541 4/11 Cross Hyb Matching Probes None
SNAP00000019542 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5703184-5705575(+) 100.0 100.0
chrI:5711317-5713708(+) 100.0 100.0
Public Domain and Genome References
Gene Title monooxygenase
Ensembl T19B4.1
C04F1.2
Entrez Gene 266833 Entrez gene
SwissProt P83388 EMBL-EBI
WormBase CE13736 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604356_AT similar to peptidylglycine alpha-amidating monooxygenase isoform a, preproprotein cfa
CANINE:1591020_AT similar to peptidylglycine alpha-amidating monooxygenase isoform a, preproprotein cfa
CANINE:1588318_AT similar to peptidylglycine alpha-amidating monooxygenase isoform a, preproprotein cfa
CANINE_2:CFA.1484.1.S1_AT similar to peptidylglycine alpha-amidating monooxygenase isoform a, preproprotein cfa
CANINE_2:CFA.1484.1.S1_S_AT similar to peptidylglycine alpha-amidating monooxygenase isoform a, preproprotein cfa
CANINE_2:CFA.1484.2.S1_AT similar to peptidylglycine alpha-amidating monooxygenase isoform a, preproprotein cfa
CANINE_2:CFA.1484.3.S1_S_AT similar to peptidylglycine alpha-amidating monooxygenase isoform a, preproprotein cfa
CANINE_2:CFAAFFX.12247.1.S1_S_AT similar to peptidylglycine alpha-amidating monooxygenase isoform a, preproprotein cfa
DROSOPHILA_2:1636841_AT dm
DROSGENOME1:154695_AT dm
CHICKEN:GGA.17282.1.S1_AT similar to peptidylglycine alpha-amidating monooxygenase isoform d, preproprotein; peptidyl alpha-amidating enzyme; peptidylglycine 2-hydroxylase; peptidylglycine alpha-hydroxylating monooxygenase; peptidyl-alpha-hydroxyglycine alpha-amidating lyas... gga
CHICKEN:GGAAFFX.9717.2.S1_S_AT similar to peptidylglycine alpha-amidating monooxygenase isoform d, preproprotein; peptidyl alpha-amidating enzyme; peptidylglycine 2-hydroxylase; peptidylglycine alpha-hydroxylating monooxygenase; peptidyl-alpha-hydroxyglycine alpha-amidating lyas... gga
HG-FOCUS:202336_S_AT peptidylglycine alpha-amidating monooxygenase hs
HG-U133A:202336_S_AT peptidylglycine alpha-amidating monooxygenase hs
HG-U133_PLUS_2:202336_S_AT peptidylglycine alpha-amidating monooxygenase hs
HG-U133A_2:202336_S_AT peptidylglycine alpha-amidating monooxygenase hs
HG-U133A_2:214620_X_AT peptidylglycine alpha-amidating monooxygenase hs
HG-U133_PLUS_2:214620_X_AT peptidylglycine alpha-amidating monooxygenase hs
HG-U133A:214620_X_AT peptidylglycine alpha-amidating monooxygenase hs
HU35KSUBD:RC_T10875_F_AT peptidylglycine alpha-amidating monooxygenase hs
HUGENEFL:M37721_AT peptidylglycine alpha-amidating monooxygenase hs
U133_X3P:G4505602_3P_A_AT peptidylglycine alpha-amidating monooxygenase hs
U133_X3P:HS.83920.2.S2_3P_X_AT peptidylglycine alpha-amidating monooxygenase hs
U133_X3P:HS.83920.2.S2_3P_A_AT peptidylglycine alpha-amidating monooxygenase hs
U133_X3P:HS.83920.1.A1_3P_A_AT peptidylglycine alpha-amidating monooxygenase hs
U133_X3P:212958_3P_X_AT peptidylglycine alpha-amidating monooxygenase hs
HG-U133A_2:212958_X_AT peptidylglycine alpha-amidating monooxygenase hs
HG-U133_PLUS_2:212958_X_AT peptidylglycine alpha-amidating monooxygenase hs
HG-U133A:212958_X_AT peptidylglycine alpha-amidating monooxygenase hs
HG-U95AV2:38465_AT peptidylglycine alpha-amidating monooxygenase hs
HG-U95C:51475_AT Peptidylglycine alpha-amidating monooxygenase hs
HG-U95D:88929_AT Peptidylglycine alpha-amidating monooxygenase hs
MOE430A:1418908_AT peptidylglycine alpha-amidating monooxygenase mm
MOUSE430A_2:1418908_AT peptidylglycine alpha-amidating monooxygenase mm
MOUSE430_2:1418908_AT peptidylglycine alpha-amidating monooxygenase mm
MU11KSUBA:U79523_S_AT peptidylglycine alpha-amidating monooxygenase mm
MG-U74AV2:100496_AT peptidylglycine alpha-amidating monooxygenase mm
MU19KSUBB:TC30381_F_AT Peptidylglycine alpha-amidating monooxygenase (Pam), mRNA mm
MU19KSUBB:TC30381_I_AT Peptidylglycine alpha-amidating monooxygenase (Pam), mRNA mm
MU19KSUBB:TC30382_AT Peptidylglycine alpha-amidating monooxygenase (Pam), mRNA mm
MU19KSUBB:TC30383_I_AT Peptidylglycine alpha-amidating monooxygenase (Pam), mRNA mm
MU19KSUBB:TC30383_S_AT Peptidylglycine alpha-amidating monooxygenase (Pam), mRNA mm
RG-U34A:E03428CDS_S_AT peptidylglycine alpha-amidating monooxygenase rn
RG-U34A:RC_AA799575_F_AT peptidylglycine alpha-amidating monooxygenase rn
RG-U34A:M82845_S_AT peptidylglycine alpha-amidating monooxygenase rn
RG-U34A:RC_AA799575_R_AT peptidylglycine alpha-amidating monooxygenase rn
RG-U34A:U52663MRNA#3_S_AT peptidylglycine alpha-amidating monooxygenase rn
RG-U34A:RC_AA891068_F_AT peptidylglycine alpha-amidating monooxygenase rn
RG-U34C:RC_AA817825_F_AT peptidylglycine alpha-amidating monooxygenase rn
RG-U34C:RC_AI229728_F_AT peptidylglycine alpha-amidating monooxygenase rn
RG-U34C:RC_AI234258_F_AT peptidylglycine alpha-amidating monooxygenase rn
RG-U34C:RC_AI233806_F_AT peptidylglycine alpha-amidating monooxygenase rn
RG-U34C:RC_AI103782_F_AT peptidylglycine alpha-amidating monooxygenase rn
RG-U34C:RC_AI228068_F_AT peptidylglycine alpha-amidating monooxygenase rn
RAE230A:1370689_AT peptidylglycine alpha-amidating monooxygenase rn
RAT230_2:1370689_AT peptidylglycine alpha-amidating monooxygenase rn
RAE230A:1370502_AT peptidylglycine alpha-amidating monooxygenase rn
RAT230_2:1370502_AT peptidylglycine alpha-amidating monooxygenase rn
RAE230A:1367687_A_AT peptidylglycine alpha-amidating monooxygenase rn
RAT230_2:1367687_A_AT peptidylglycine alpha-amidating monooxygenase rn
RG-U34A:M63662_S_AT Peptidylglycine alpha-amidating monooxygenase rn
RG-U34C:RC_AI170526_AT Peptidylglycine alpha-amidating monooxygenase rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6518 peptide metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
4504 peptidylglycine monooxygenase activity inferred from electronic annotation QuickGO AmiGO
5507 copper ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37637 Hypothetical protein T19B4.1 [Caenorhabditis elegans] ref|NP_491666.1| T19B4.1 [Caenorhabditis elegans] 0.0
blast T33048 hypothetical protein C04F1.2 - Caenorhabditis elegans 0.0
blast CAE68939 Hypothetical protein CBG14919 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000323 EMBL-EBI Copper type II, ascorbate-dependent monooxygenase 1.4E-76
Pfam IPR001258 EMBL-EBI NHL repeat 2.2E-7
Pfam IPR001258 EMBL-EBI NHL repeat 2.3E-5
Pfam IPR001258 EMBL-EBI NHL repeat 6.5E-9
Pfam IPR001258 EMBL-EBI NHL repeat 1.7E-4
Pfam IPR000323 EMBL-EBI Copper type II, ascorbate-dependent monooxygenase 5.9E-91
Pfam IPR000323 EMBL-EBI Copper type II, ascorbate-dependent monooxygenase 1.4E-37
Pfam IPR001258 EMBL-EBI NHL repeat 2.2E-7
Pfam IPR001258 EMBL-EBI NHL repeat 2.3E-5
Pfam IPR001258 EMBL-EBI NHL repeat 6.5E-9
Pfam IPR001258 EMBL-EBI NHL repeat 1.7E-4
Pfam IPR000323 EMBL-EBI Copper type II, ascorbate-dependent monooxygenase 5.9E-91
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491666.1 1 5-27
T19B4.1 1 5-27
GENEFINDER00000019543 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:189067_S_AT
ggatccgatcaacaccattactgtaaaccaactggaatcacgagagttgaagatcaattg
tatgtgactgatggatactgtaatagtcgagttgtcgtattggatttgaatggaaaacga
attcgtcaatttggcttgccaggagaagatgctggacaatttaatcttccacatgatatt
gtttctgattctgctggaaggttacttgttactgatcgagaaaatggacgagttcaacat
atgacaactcaaggacatgttattgaagaatttaagtctacaatgttcacaaatatctat
tctgctgctagtcacgaggattatgttttcatggttccaggaagacccattatgggacat
gaaaccgaaggaatcgctgtatttgtcggaagatctggtactggtttaattgaatatgca
ttcggtccaactacaaaaggaaaaagagaacaaatgggaccacagtttggtcaaccgcat
tgcttgagagtttgtccggatggtggacatatctttgttggagatattgcggaaggaaaa
gcacgtctttggcagtttaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCCGATCAACACCATTACTGTA 634 511 1174 Antisense
GAATTCGTCAATTTGGCTTGCCAGG 342 323 1292 Antisense
ACATGATATTGTTTCTGATTCTGCT 495 107 1344 Antisense
GGAAGGTTACTTGTTACTGATCGAG 234 529 1369 Antisense
TATTCTGCTGCTAGTCACGAGGATT 657 661 1471 Antisense
GGTTCCAGGAAGACCCATTATGGGA 32 507 1506 Antisense
GAAGGAATCGCTGTATTTGTCGGAA 539 333 1540 Antisense
GAATATGCATTCGGTCCAACTACAA 321 323 1585 Antisense
ACCACAGTTTGGTCAACCGCATTGC 346 85 1632 Antisense
ACCGCATTGCTTGAGAGTTTGTCCG 14 91 1647 Antisense
AAAGCACGTCTTTGGCAGTTTAAGG 448 111 1711 Antisense
Sequence Source Affymetrix Proprietary Database