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[189066_s_at]

Description Y39E4A.3 /REP_DB=WormBase Gene ID /WP=CE16618 /TR=O45924 /GB=CAA16329.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Transketolase
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 31      6grp_total > 14      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1487
1 2 3 4 range
A 1240.2
(1.1)
P 		1443.9
(2)
P 		1663
(3)
P 		310.2
(-3)
P 		1353
B 1021.4
(-0.1)
P 		1218.2
(0.7)
P 		1773.6
(3)
P 		303.5
(-3)
P 		1470
C 1195
(0.9)
P 		1637.1
(2.9)
P 		1669.6
(3)
P 		286.2
(-3)
P 		1383
avr 1152.2
(0.6) 		1433.1
(1.8) 		1702.1
(3) 		300
(-3) 		1402

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 895
1 2 3 4 5 6 range
A 967.6
(1.9)
P 		1078
(3)
P 		941
(1.6)
P 		776.7
(-0.1)
P 		761.1
(-0.2)
P 		491.9
(-3)
P 		586
B 1169.5
(3)
P 		906.9
(0.4)
P 		1029.4
(1.6)
P 		753.8
(-1.1)
P 		756.6
(-1.1)
P 		560.4
(-3)
P 		609
C 1387.3
(3)
P 		882
(-0.5)
P 		976.7
(0.1)
P 		703.1
(-1.8)
P 		781.6
(-1.2)
P 		526.4
(-3)
P 		861
avr 1174.8
(3) 		955.6
(1) 		982.4
(1.2) 		744.5
(-1) 		766.4
(-0.8) 		526.2
(-3) 		649
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 537
1 2 3 4 range
A 451.5
(3)
P 		313.4
(1)
P 		434.7
(2.8)
P 		45.4
(-3)
P 		406
B 325.7
(1.5)
P 		300.9
(1.1)
P 		411
(3)
P 		64.7
(-3)
P 		346
C 395.6
(0.9)
P 		470.7
(1.7)
P 		581.9
(3)
P 		48.3
(-3)
P 		534
avr 390.9
(1.8) 		361.7
(1.4) 		475.9
(3) 		52.8
(-3) 		423

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 394
1 2 3 4 5 6 range
A 178.4
(-1.7)
P 		383.4
(3)
P 		204.9
(-1.1)
P 		197
(-1.2)
P 		229.7
(-0.5)
P 		119.8
(-3)
P 		264
B 406.9
(3)
P 		301.9
(-0)
P 		250
(-1.5)
P 		199.7
(-3)
P 		307.4
(0.1)
P 		209
(-2.7)
P 		207
C 514.2
(3)
P 		269.1
(-0.9)
P 		248.6
(-1.3)
P 		141.4
(-3)
P 		252.9
(-1.2)
P 		176.2
(-2.4)
P 		373
avr 366.5
(3) 		318.1
(1.5) 		234.5
(-1) 		179.4
(-2.7) 		263.3
(-0.1) 		168.3
(-3) 		198
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189066_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6213
Sequence Type Exemplar sequence
Representative Public ID Y39E4A.3 NCBI
Target Description Y39E4A.3 /REP_DB=WormBase Gene ID /WP=CE16618 /TR=O45924 /GB=CAA16329.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Transketolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067292(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067292 NCBI Caenorhabditis elegans Y39E4A.3 (Transketolase) mRNA, complete cds. 11/11 None
SNAP00000009409 ENSEMBL cdna:SNAP chromosome:CEL140:III:12967738:12971336:-1 11/11 None
GENEFINDER00000009418 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12967738:12969446:-1 11/11 None
Y39E4A.3.1 ENSEMBL cdna:known chromosome:CEL140:III:12967461:12971336:-1 gene:Y39E4A.3 11/11 None
Y39E4A.3.2 ENSEMBL cdna:known chromosome:CEL140:III:12967461:12971338:-1 gene:Y39E4A.3 11/11 None
Y39E4A.3.3 ENSEMBL cdna:known chromosome:CEL140:III:12967461:12972014:-1 gene:Y39E4A.3 11/11 None
Y39E4A.3.4 ENSEMBL cdna:known chromosome:CEL140:III:12967461:12971623:-1 gene:Y39E4A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12967733-12971332(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y39E4A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16329 Hypothetical protein Y39E4A.3a [Caenorhabditis elegans] ref|NP_499693.2| Y39E4A.3 [Caenorhabditis elegans] 0.0
blast CAJ21557 Hypothetical protein Y39E4A.3b [Caenorhabditis elegans] 0.0
blast CAE69558 Hypothetical protein CBG15770 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001017 EMBL-EBI Dehydrogenase, E1 component 1.0E-126
Pfam IPR001017 EMBL-EBI Dehydrogenase, E1 component 6.5E-95
Sequence
Target Sequence 
>C. ELEGANS:189066_S_AT
gccgcttctgaaggagatgctcacgcagcgttcaacttcgccgccactctcaaatgcccg
attattttcttctgtagaaacaacggatacgccatttctacgccgactagtgaacagtat
ggaggagatggaattgctggaaagggaccggcttatggtcttcatactattagagtcgat
ggaaacgaccttctcgccgtctacaacgcgacaaaagaagcccgccgagtcgccctcacc
aaccgcccagtgctcatcgaggccatgacctaccgcctcggccatcattcaacatccgac
gactcgaccgcctaccgatcttccgatgaagttcaaacatggggagacaaggatcatccg
atcactcgcttcaagaagtacatcacggaacgtggatggtggaatgaggagaaggagatg
gaatggcagaaagaggtgaagaagcgtgtgctcaccgagttcgccgcagctgagaagcgg
aagaaggcgcattatcatgatttgttcgaggatgtttatgatgagcttccactcagactt
cgccgtcagagagatgagctggatgctcatgttgcggagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGCTTCTGAAGGAGATGCTCACG 548 285 823 Antisense
AGATGCTCACGCAGCGTTCAACTTC 513 67 837 Antisense
AATGCCCGATTATTTTCTTCTGTAG 434 167 875 Antisense
CAACGGATACGCCATTTCTACGCCG 556 185 903 Antisense
GGGACCGGCTTATGGTCTTCATACT 439 493 966 Antisense
TTCTCGCCGTCTACAACGCGACAAA 543 693 1013 Antisense
ATCATTCAACATCCGACGACTCGAC 375 29 1106 Antisense
TCATCCGATCACTCGCTTCAAGAAG 14 623 1176 Antisense
TATGATGAGCTTCCACTCAGACTTC 577 655 1339 Antisense
ACTCAGACTTCGCCGTCAGAGAGAT 665 97 1353 Antisense
GAGCTGGATGCTCATGTTGCGGAGT 385 387 1378 Antisense
Sequence Source Affymetrix Proprietary Database