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[189063_at] 7TM chemoreceptor, srd family

Description K10B4.5 /REP_DB=WormBase Gene ID /WP=CE21069 /TR=O17240 /GB=AAB71010.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 20      4grp_total > 21      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 132.2
(0.9)
P 		103.2
(-0.3)
M 		41.3
(-3)
A 		179.7
(3)
P 		138
B 92.4
(2.1)
P 		74.5
(0.8)
A 		22.7
(-3)
A 		105.2
(3)
P 		83
C 103.9
(1.1)
M 		48.5
(-3)
A 		52.2
(-2.7)
A 		130.5
(3)
P 		82
avr 109.5
(1.3) 		75.4
(-0.8) 		38.7
(-3) 		138.5
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 108.5
(3)
A 		73.9
(0.2)
A 		52.5
(-1.5)
A 		67.8
(-0.2)
A 		104.3
(2.7)
A 		33.3
(-3)
A 		75
B 58.6
(-3)
A 		101.2
(3)
A 		84.4
(0.6)
P 		70.5
(-1.3)
A 		66.2
(-1.9)
P 		71.7
(-1.2)
M 		43
C 8.5
(-3)
A 		63.8
(1.4)
A 		67.9
(1.8)
A 		83.1
(3)
A 		28.5
(-1.4)
A 		34.5
(-0.9)
A 		75
avr 58.5
(-0.8) 		79.6
(3) 		68.3
(1) 		73.8
(1.9) 		66.3
(0.6) 		46.5
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 48.1
(3)
P 		22.4
(-1.1)
M 		10.8
(-3)
A 		26.3
(-0.5)
P 		37
B 29.5
(3)
P 		18.4
(0.2)
A 		5.3
(-3)
A 		22.4
(1.2)
P 		24
C 34.4
(3)
M 		13.9
(-3)
A 		18.2
(-1.7)
A 		22
(-0.6)
P 		21
avr 37.3
(3) 		18.2
(-1.4) 		11.4
(-3) 		23.6
(-0.2) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 20
(0.1)
A 		26.3
(1.7)
A 		11.4
(-2.2)
A 		17.2
(-0.7)
A 		31.5
(3)
A 		8.1
(-3)
A 		23
B 20.4
(-2.3)
A 		33.7
(3)
A 		20.5
(-2.3)
P 		18.7
(-3)
A 		26.9
(0.3)
P 		26.7
(0.2)
M 		15
C 3.2
(-3)
A 		19.5
(3)
A 		17.3
(2.2)
A 		16.7
(2)
A 		9.2
(-0.8)
A 		11.6
(0.1)
A 		16
avr 14.5
(-3) 		26.5
(3) 		16.4
(-2.1) 		17.5
(-1.5) 		22.5
(1) 		15.5
(-2.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4586
Sequence Type Exemplar sequence
Representative Public ID K10B4.5 NCBI
Target Description K10B4.5 /REP_DB=WormBase Gene ID /WP=CE21069 /TR=O17240 /GB=AAB71010.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061266 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-3) (srd-3) mRNA, complete cds. 11/11 None
SNAP00000039349 ENSEMBL cdna:SNAP chromosome:CEL140:II:126938:127967:-1 11/11 None
GENEFINDER00000039356 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:126938:133577:-1 11/11 None
K10B4.5 ENSEMBL cdna:known chromosome:CEL140:II:126938:128706:-1 gene:K10B4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:126937-128706(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-3
Ensembl K10B4.5
Entrez Gene 187251 Entrez gene
SwissProt O17240 EMBL-EBI
WormBase CE21069 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493667 Serpentine Receptor, class D (delta) family member (srd-3) [Caenorhabditis elegans] gb|AAB71010.2| Serpentine receptor, class d (delta) protein 3 [Caenorhabditis elegans] sp|O17240|SRD3_CAEEL Serpentine receptor class delta-3 (Protein srd-3) 0.0
blast NP_493668 C. elegans WNT family member (cwn-1) [Caenorhabditis elegans] gb|AAB71011.1| C. elegans wnt family protein 1, isoform a [Caenorhabditis elegans] sp|P34888|WNT1_CAEEL Wnt-1 protein precursor emb|CAA51446.1| Wnt-1 protein [Caenorhabditis elegans] 0.0
blast CAE62803 Hypothetical protein CBG06978 [Caenorhabditis briggsae] 0.0
blast CAE62804 Hypothetical protein CBG06979 [Caenorhabditis briggsae] 1.0E-130
blast NP_493667 Serpentine Receptor, class D (delta) family member (srd-3) [Caenorhabditis elegans] gb|AAB71010.2| Serpentine receptor, class d (delta) protein 3 [Caenorhabditis elegans] sp|O17240|SRD3_CAEEL Serpentine receptor class delta-3 (Protein srd-3) 1.0E-126
blast CAE62804 Hypothetical protein CBG06979 [Caenorhabditis briggsae] 9.0E-86
blast CAA88700 Hypothetical protein F33H1.5 [Caenorhabditis elegans] ref|NP_496195.1| Serpentine Receptor, class D (delta) family member (srd-1) [Caenorhabditis elegans] sp|Q19992|SRD1_CAEEL Serpentine receptor class delta-1 (Protein srd-1) 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR005817 EMBL-EBI Wnt superfamily 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493667.1 5 21-43,102-124,137-159,201-223,258-280
K10B4.5 5 21-43,102-124,137-159,201-223,258-280
SNAP00000039349 3 28-50,92-114,149-171
GENEFINDER00000039356 7 7-29,414-436,448-467,495-517,530-552,594-616,651-673
Sequence
Target Sequence 
>C. ELEGANS:189063_AT
atctgtattttaacctaccttccatcactcctatttgtaatcgtgtactggtcggatgta
gccaacgaagacgcgctgaaaagaattgtgaattcatttcacccagagtatatatatgac
tctaaggaaatttggggagacctggttattgctggtaacatgagttgctggtcagctgcg
accttctctgcaatcgtctacatgacaatcccatgtttcccgatctacggagtcattgtc
tttttccgtcacaaaaccttgaaaagtctggatggccgtgggcgaataacaatgtcagag
actacaaggtcatcgcacaagcagttgatcaaagctctgacaatacaagcaatcgtccca
attttttggctcacagcgtccacattctacctgttagctttgtttcaagttgttggtaga
gtgattgtggagaacatgccatttcggataatggagtgtatgccgatgattaccccactg
atttctctgtactttgtcagaccctatagatcagcgctaacaggctggttttttccaact
tcgcttcttaagccagtaatcgccagtgcaatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGTATTTTAACCTACCTTCCAT 197 35 436 Antisense
CCTTCCATCACTCCTATTTGTAATC 664 269 453 Antisense
ATGAGTTGCTGGTCAGCTGCGACCT 706 43 595 Antisense
CTTCTCTGCAATCGTCTACATGACA 115 221 618 Antisense
TCCCATGTTTCCCGATCTACGGAGT 135 599 644 Antisense
GACTACAAGGTCATCGCACAAGCAG 704 371 735 Antisense
TCCACATTCTACCTGTTAGCTTTGT 214 589 814 Antisense
GGAGTGTATGCCGATGATTACCCCA 280 517 888 Antisense
TTGTCAGACCCTATAGATCAGCGCT 165 707 929 Antisense
TTTTCCAACTTCGCTTCTTAAGCCA 121 677 966 Antisense
AAGCCAGTAATCGCCAGTGCAATGC 242 149 985 Antisense
Sequence Source Affymetrix Proprietary Database