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[189062_s_at] 7TM chemoreceptor, str family /// ---

Description C01B4.3 /REP_DB=WormBase Gene ID /WP=CE20472 /TR=Q9UAT9 /GB=AAD14695.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 11      4grp_total > 12      6grp_cgc > 52      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 31.7
(-1.3)
A 		12.2
(-3)
A 		21.8
(-2.2)
A 		81.1
(3)
P 		69
B 40.3
(3)
A 		18.3
(-3)
A 		24
(-1.4)
A 		23
(-1.7)
A 		22
C 23
(-2.2)
A 		43.6
(0.1)
P 		16
(-3)
A 		69.1
(3)
P 		53
avr 31.7
(-1.2) 		24.7
(-2.3) 		20.6
(-3) 		57.7
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 52.3
(3)
A 		11
(-3)
A 		31.2
(-0.1)
A 		23.7
(-1.2)
A 		25.3
(-0.9)
A 		27.7
(-0.6)
A 		41
B 24.2
(-1.6)
M 		39.1
(3)
A 		29
(-0.1)
P 		22.4
(-2.1)
A 		29.1
(-0.1)
P 		19.5
(-3)
A 		20
C 3.8
(-3)
A 		56.4
(3)
P 		30.5
(0)
A 		21.9
(-0.9)
A 		32.2
(0.2)
P 		6.1
(-2.7)
A 		53
avr 26.8
(0.1) 		35.5
(3) 		30.2
(1.2) 		22.7
(-1.3) 		28.9
(0.8) 		17.8
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.5
(2.7)
A 		2.7
(-3)
A 		5.7
(-1)
A 		11.9
(3)
P 		9
B 12.9
(3)
A 		4.5
(-3)
A 		5.6
(-2.2)
A 		4.9
(-2.7)
A 		8
C 7.6
(-1.3)
A 		12.5
(3)
P 		5.6
(-3)
A 		11.7
(2.3)
P 		7
avr 10.7
(3) 		6.6
(-1.8) 		5.6
(-3) 		9.5
(1.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.6
(3)
A 		3.9
(-3)
A 		6.8
(0.1)
A 		6
(-0.8)
A 		7.6
(0.9)
A 		6.7
(-0.1)
A 		6
B 8.4
(-0.9)
M 		13
(3)
A 		7
(-2.1)
P 		5.9
(-3)
A 		11.8
(2)
P 		7.3
(-1.8)
A 		7
C 1.4
(-3)
A 		17.2
(3)
P 		7.8
(-0.6)
A 		4.4
(-1.9)
A 		10.4
(0.4)
P 		2.1
(-2.7)
A 		16
avr 6.5
(-1.9) 		11.4
(3) 		7.2
(-1.2) 		5.4
(-3) 		9.9
(1.5) 		5.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189062_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15218
Sequence Type Exemplar sequence
Representative Public ID C01B4.3 NCBI
Target Description C01B4.3 /REP_DB=WormBase Gene ID /WP=CE20472 /TR=Q9UAT9 /GB=AAD14695.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071258(11), NM_071285(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071258 NCBI Caenorhabditis elegans Y19D10A.2 (Y19D10A.2) mRNA, complete cds. 11/11 None
NM_071285 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-258) (str-258) mRNA, complete cds. 11/11 None
GENEFINDER00000008437 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2494063:2513096:1 11/11 None
GENEFINDER00000029978 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2385784:2404817:1 11/11 None
Y19D10A.2 ENSEMBL cdna:known chromosome:CEL140:V:2401185:2404817:1 gene:Y19D10A.2 11/11 None
C01B4.3 ENSEMBL cdna:known chromosome:CEL140:V:2509464:2513096:1 gene:C01B4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2401184-2404817(+) 100.0 100.0
chrV:2509463-2513096(+) 100.0 100.0
chrV:2409114-2413320(+) 90.08 90.08
chrV:2517393-2521599(+) 90.08 90.08
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family

Gene Symbol str-258
Ensembl Y19D10A.2
C01B4.3
Entrez Gene 182054 Entrez gene
189481 Entrez gene
SwissProt Q9UAT9 EMBL-EBI
Q966D2 EMBL-EBI
WormBase CE20472 Wormbase
CE21452 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503659 Y19D10A.2 [Caenorhabditis elegans] gb|AAK68415.1| Hypothetical protein Y19D10A.2 [Caenorhabditis elegans] 0.0
blast AAD14695 Seven tm receptor protein 258 [Caenorhabditis elegans] ref|NP_503686.1| Seven TM Receptor family member (str-258) [Caenorhabditis elegans] 0.0
blast NP_503657 Y19D10A.4 [Caenorhabditis elegans] gb|AAK68417.1| Hypothetical protein Y19D10A.4 [Caenorhabditis elegans] 0.0
blast AAD14699 Hypothetical protein C01B4.7 [Caenorhabditis elegans] ref|NP_503683.1| C01B4.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.2E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.7E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.7E-9
Pfam IPR008183 EMBL-EBI Aldose 1-epimerase 2.0E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503659.1 6 6-28,35-57,107-129,160-182,239-261,282-304
NP_503686.1 6 6-28,35-57,86-108,129-151,208-230,251-273
Y19D10A.2 6 6-28,35-57,107-129,160-182,239-261,282-304
C01B4.3 6 6-28,35-57,86-108,129-151,208-230,251-273
GENEFINDER00000008437 25 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,955-977,989-1011,1039-1061,1082-1099,1134-1156,1184-1206,1278-1300,1378-1400,1413-1430,1459-1481,1501-1523,1575-1597,1628-1650,1657-1679
GENEFINDER00000029978 25 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,955-977,989-1011,1039-1061,1082-1099,1134-1156,1184-1206,1278-1300,1378-1400,1413-1430,1459-1481,1501-1523,1575-1597,1628-1650,1657-1679
Sequence
Target Sequence 
>C. ELEGANS:189062_S_AT
gccggatttttaatgcgggccgacgagcaaactgatcgattcataaatgaaaactatcca
ccacttgtcaaaaacctctcaactattaatgatctctactatgtggggccattgttctgg
cccaaatacgccaactcaatgaccgagcattttttcagttggaaggctgcaaggtcatgt
ctgattgcaatgggcttaattggattttccaactcaattatggtgttcttcggtctaaaa
gcttatttggtaatgaaaaacttgatgtcacagtcaacttcttctgacaagttcaaaagc
attcagcagcaattactacttgctctaattctgcaaacgtcgattccagtcctcttgatg
catattcctgcaaccgcgatttacctgacaatatttatgagaaagtcgaacgagattata
ggagaaaccattgggttgacaattgcaatgtatcctgcgctgaatcctattccaacgatt
ttaattgtcaaaaactaccggactgtgttgattaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGGATTTTTAATGCGGGCCGACG 389 281 451 Antisense
GACGAGCAAACTGATCGATTCATAA 402 379 472 Antisense
GCCCAAATACGCCAACTCAATGACC 253 285 570 Antisense
GACCGAGCATTTTTTCAGTTGGAAG 122 383 591 Antisense
GGAAGGCTGCAAGGTCATGTCTGAT 342 531 611 Antisense
GGTCATGTCTGATTGCAATGGGCTT 497 503 623 Antisense
CCAACTCAATTATGGTGTTCTTCGG 311 277 659 Antisense
GGTGTTCTTCGGTCTAAAAGCTTAT 472 499 672 Antisense
TGGGTTGACAATTGCAATGTATCCT 538 553 882 Antisense
CTGCGCTGAATCCTATTCCAACGAT 586 235 905 Antisense
AAACTACCGGACTGTGTTGATTAAT 167 1 942 Antisense
Sequence Source Affymetrix Proprietary Database