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[189061_at] Casein kinase

Description F26A1.4 /REP_DB=WormBase Gene ID /WP=CE24919 /TR=Q19794 /GB=AAA68246.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Casein kinase
Cluster 6grp_total > 66      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.2
(-3)
A 		4.7
(-1)
A 		8.4
(1.9)
A 		9.8
(3)
A 		8
B 2.7
(-2.3)
A 		6.5
(3)
A 		2.2
(-3)
A 		4.2
(-0.2)
A 		4
C 2.7
(-3)
A 		3.6
(-2.5)
A 		3.4
(-2.6)
A 		13.2
(3)
A 		11
avr 2.5
(-3) 		4.9
(-0.8) 		4.7
(-1) 		9.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.7
(-2.3)
A 		2
(-3)
A 		8.4
(3)
A 		4.8
(-0.4)
A 		2.5
(-2.5)
A 		7.9
(2.5)
A 		6
B 2.7
(-3)
A 		4.1
(-2.4)
A 		7
(-1.3)
A 		3.6
(-2.6)
A 		7.9
(-0.9)
A 		17.7
(3)
A 		15
C 4.6
(-2.1)
A 		5.2
(-1.9)
A 		2.7
(-3)
A 		6
(-1.5)
A 		2.6
(-3)
A 		16.6
(3)
A 		14
avr 3.3
(-3) 		3.8
(-2.7) 		6
(-1.5) 		4.8
(-2.2) 		4.3
(-2.4) 		14.1
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.8
(-3)
A 		1
(-2.1)
A 		2.2
(3)
A 		1.4
(-0.4)
A 		1
B 0.9
(-0.8)
A 		1.6
(3)
A 		0.5
(-3)
A 		0.9
(-0.8)
A 		1
C 0.9
(-3)
A 		1
(-2.5)
A 		1.2
(-1.6)
A 		2.2
(3)
A 		1
avr 0.9
(-3) 		1.2
(-0) 		1.3
(1) 		1.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.7
(-2.1)
A 		1.8
(2.6)
A 		1.2
(-0)
A 		0.8
(-1.7)
A 		1.9
(3)
A 		1
B 0.9
(-3)
A 		1.4
(-2.5)
A 		1.7
(-2.2)
A 		0.9
(-3)
A 		3.2
(-0.6)
A 		6.6
(3)
A 		6
C 1.7
(-1.8)
A 		1.6
(-1.9)
A 		0.7
(-3)
A 		1.2
(-2.4)
A 		0.8
(-2.9)
A 		5.6
(3)
A 		5
avr 1
(-3) 		1.2
(-2.7) 		1.4
(-2.4) 		1.1
(-2.8) 		1.6
(-2) 		4.7
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7247
Sequence Type Exemplar sequence
Representative Public ID F26A1.4 NCBI
Target Description F26A1.4 /REP_DB=WormBase Gene ID /WP=CE24919 /TR=Q19794 /GB=AAA68246.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Casein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065594(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065594 NCBI Caenorhabditis elegans F26A1.4 (F26A1.4) mRNA, complete cds. 11/11 None
GENEFINDER00000001894 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4817484:4818983:1 11/11 None
SNAP00000001864 ENSEMBL cdna:SNAP chromosome:CEL140:III:4817555:4818983:1 11/11 None
F26A1.4 ENSEMBL cdna:known chromosome:CEL140:III:4818129:4818983:1 gene:F26A1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4817554-4818983(+) 86.57 100.0
Public Domain and Genome References
Gene Title Casein kinase
Ensembl F26A1.4
Entrez Gene 184945 Entrez gene
SwissProt Q19794 EMBL-EBI
WormBase CE02685 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_497995 F26A1.4 [Caenorhabditis elegans] gb|AAA68246.4| Hypothetical protein F26A1.4 [Caenorhabditis elegans] 1.0E-121
blast AAB42262 Hypothetical protein ZK354.6 [Caenorhabditis elegans] ref|NP_500772.1| ZK354.6 [Caenorhabditis elegans] 1.0E-102
blast AAB42262 Hypothetical protein ZK354.6 [Caenorhabditis elegans] ref|NP_500772.1| ZK354.6 [Caenorhabditis elegans] 1.0E-101
blast CAE64365 Hypothetical protein CBG09052 [Caenorhabditis briggsae] 3.0E-98
blast CAE64365 Hypothetical protein CBG09052 [Caenorhabditis briggsae] 1.0E-97
blast AAB42262 Hypothetical protein ZK354.6 [Caenorhabditis elegans] ref|NP_500772.1| ZK354.6 [Caenorhabditis elegans] 6.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.2
Pfam IPR000719 EMBL-EBI Protein kinase 3.2E-4
Pfam IPR000719 EMBL-EBI Protein kinase 3.2E-4
Sequence
Target Sequence 
>C. ELEGANS:189061_AT
gcccaagttctgaaggctctcgcgttggtccatcgggcagaattcttgcatcgggacata
aagccacccaattgttgtattggtgcaacggattgtactcgtatctacttgattgattac
gttctgacacgccaataccttgacaagtgtggaaccgtccgaaacccccgtcccggactt
ggccttcgtggtacaatgcgctacatgagtttggatgctcatgcacgtcaggacctcggc
cccaaaaacgacttggtttcattcctctacacaactattgaatgtggagatggatgtctt
ccatggtcgtacgagaaatccgaggaaaactgcatcaagttgaagcaagcccatattgga
gagaagctgtgcatcaagaaaccactcatgacgaaagctgcagagtacatcgagtctctg
aactatcacagtattccggattatgagaagctgctcgcattgattgaagagtgcaatcca
gcggatctcaaggaaagcgagccttacgaatggcagtaccgtcagcctcacaatccaatg
acaccgacaactggcgaaggactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCAAGTTCTGAAGGCTCTCGCGT 80 287 385 Antisense
CGTTGGTCCATCGGGCAGAATTCTT 137 245 407 Antisense
GCAACGGATTGTACTCGTATCTACT 112 321 469 Antisense
GATTACGTTCTGACACGCCAATACC 259 429 499 Antisense
CCTTCGTGGTACAATGCGCTACATG 211 265 567 Antisense
GTTTCATTCCTCTACACAACTATTG 546 449 640 Antisense
GATGTCTTCCATGGTCGTACGAGAA 250 409 677 Antisense
GAAACCACTCATGACGAAAGCTGCA 513 357 762 Antisense
ACGAATGGCAGTACCGTCAGCCTCA 559 91 890 Antisense
GTCAGCCTCACAATCCAATGACACC 511 465 905 Antisense
GACACCGACAACTGGCGAAGGACTT 304 351 924 Antisense
Sequence Source Affymetrix Proprietary Database