[Home] | [Total List]

[189060_at] thiol protease

Description C50F4.3 /REP_DB=WormBase Gene ID /WP=CE05468 /TR=Q18740 /GB=CAA94738.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=thiol protease
Cluster 6grp_total > 35      4grp_total > 36      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 44.1
(3)
A 		23.3
(-0.4)
A 		7.7
(-3)
A 		28.8
(0.5)
A 		36
B 15
(-1.5)
A 		49.9
(3)
A 		2.9
(-3)
A 		13.1
(-1.7)
A 		47
C 3
(-3)
A 		6.9
(-2.2)
A 		10.8
(-1.3)
A 		31
(3)
A 		28
avr 20.7
(1.2) 		26.7
(3) 		7.1
(-3) 		24.3
(2.3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 30.9
(3)
A 		19.4
(0.6)
A 		1.9
(-3)
A 		4.1
(-2.5)
A 		3.5
(-2.7)
A 		11.6
(-1)
A 		29
B 7.5
(-1.4)
A 		8.8
(-1)
A 		19.7
(3)
A 		3.2
(-3)
A 		7.5
(-1.4)
A 		9.7
(-0.6)
A 		17
C 2.5
(-2.5)
A 		10.3
(2)
A 		12.1
(3)
A 		6.3
(-0.3)
A 		1.6
(-3)
A 		1.8
(-2.9)
A 		11
avr 13.6
(3) 		12.8
(2.5) 		11.2
(1.5) 		4.5
(-2.8) 		4.2
(-3) 		7.7
(-0.8) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16
(3)
A 		5.1
(-1.7)
A 		2
(-3)
A 		4.2
(-2.1)
A 		14
B 4.8
(-0.9)
A 		12.3
(3)
A 		0.7
(-3)
A 		2.8
(-1.9)
A 		12
C 1
(-3)
A 		2
(-1.6)
A 		3.8
(1)
A 		5.2
(3)
A 		4
avr 7.3
(3) 		6.5
(2.1) 		2.2
(-3) 		4.1
(-0.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5.7
(1.9)
A 		6.9
(3)
A 		0.4
(-3)
A 		1
(-2.4)
A 		1.1
(-2.4)
A 		2.8
(-0.8)
A 		7
B 2.6
(-0.3)
A 		2.9
(0.1)
A 		4.8
(3)
A 		0.8
(-3)
A 		3
(0.3)
A 		3.6
(1.2)
A 		4
C 0.9
(-2.1)
A 		3.1
(3)
A 		3.1
(3)
A 		1.3
(-1.2)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		3
avr 3.1
(0.8) 		4.3
(3) 		2.8
(0.3) 		1
(-3) 		1.5
(-2.1) 		2.3
(-0.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11895
Sequence Type Exemplar sequence
Representative Public ID C50F4.3 NCBI
Target Description C50F4.3 /REP_DB=WormBase Gene ID /WP=CE05468 /TR=Q18740 /GB=CAA94738.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=thiol protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073057 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-329) (tag-329) mRNA, complete cds. 11/11 None
SNAP00000009311 ENSEMBL cdna:SNAP chromosome:CEL140:V:9537528:9538942:1 11/11 None
GENEFINDER00000009329 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9534415:9538942:1 11/11 None
C50F4.3 ENSEMBL cdna:known chromosome:CEL140:V:9537528:9538942:1 gene:C50F4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9537527-9538942(+) 100.0 100.0
Public Domain and Genome References
Gene Title thiol protease
Gene Symbol tag-329
Ensembl C50F4.3
Entrez Gene 183677 Entrez gene
SwissProt Q18740 EMBL-EBI
WormBase CE05468 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94738 Hypothetical protein C50F4.3 [Caenorhabditis elegans] ref|NP_505458.1| Temporarily Assigned Gene name family member (tag-329) [Caenorhabditis elegans] 0.0
blast CAA94737 Hypothetical protein C50F4.2 [Caenorhabditis elegans] ref|NP_505457.1| C50F4.2 [Caenorhabditis elegans] sp|Q27483|K6PF_CAEEL Probable 6-phosphofructokinase (Phosphofructokinase) (Phosphohexokinase) 0.0
blast CAE72040 Hypothetical protein CBG19122 [Caenorhabditis briggsae] 0.0
blast CAE72190 Hypothetical protein CBG19298 [Caenorhabditis briggsae] 1.0E-128
blast CAA16407 Hypothetical protein Y51A2D.8 [Caenorhabditis elegans] ref|NP_507627.1| Y51A2D.8 [Caenorhabditis elegans] 8.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 8.9E-64
Pfam IPR000023 EMBL-EBI Phosphofructokinase 1.0E-126
Pfam IPR000023 EMBL-EBI Phosphofructokinase 3.5E-12
Pfam IPR000023 EMBL-EBI Phosphofructokinase 5.4E-17
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 8.9E-64
Sequence
Target Sequence 
>C. ELEGANS:189060_AT
ggggatttgcagcaaccgcagtagctgaagctgctctgacagtgcacttaaagaaagcaa
tgaacctttccgaacaagaggtatgtgactgtgcacccaaacatggtccaggatgcaatg
gaggcgatccagttgatggtcttgaatatattaaagaaatgggattaacaggcggaaagg
aatatccttttaatgttaatcgatcaacacaacttggtcgttgcgaatcagagaaatatg
atcgagaactgaaccctttggaattagattattatgcaattgatccgttcaatgctgaat
atcagatgactcatcatctataccttctgaatttaccaatttctgtggcatttcgtactg
gagcaagtctgtcttcctatctgagtggaattctagagcttgctgattgtgatgatgaaa
agggtggacattggcattcgggtgcaattgttggttatggtacaacaaagaattcggcgg
gacgaactgttgactactggatattcagaaactcttggtggactgattgggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGATTTGCAGCAACCGCAGTAGC 281 497 521 Antisense
GCTGAAGCTGCTCTGACAGTGCACT 252 297 544 Antisense
GTGACTGTGCACCCAAACATGGTCC 335 483 605 Antisense
GGAGGCGATCCAGTTGATGGTCTTG 571 515 640 Antisense
GATCGAGAACTGAACCCTTTGGAAT 531 417 760 Antisense
ATTTCTGTGGCATTTCGTACTGGAG 259 17 859 Antisense
TGGAGCAAGTCTGTCTTCCTATCTG 558 549 879 Antisense
GAGTGGAATTCTAGAGCTTGCTGAT 644 401 903 Antisense
AAGGGTGGACATTGGCATTCGGGTG 78 161 940 Antisense
CGGCGGGACGAACTGTTGACTACTG 271 241 995 Antisense
GAAACTCTTGGTGGACTGATTGGGG 263 355 1028 Antisense
Sequence Source Affymetrix Proprietary Database