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[189059_s_at] --- /// Amine oxidase

Description F26A1.8 /REP_DB=WormBase Gene ID /WP=CE02689 /TR=Q19796 /GB=AAA68248.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Amine oxidase
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_high_8_8 > 29      6grp_highest_nonorm > 90      6grp_total > 93      4grp_total > 17      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 36.4
(-3)
P 		53.6
(-0.9)
P 		37.3
(-2.9)
P 		86.5
(3)
P 		50
B 13.6
(-3)
A 		33.4
(-0.9)
A 		43.5
(0.2)
P 		68.9
(3)
P 		55
C 36.1
(-1.3)
P 		41.2
(1.5)
A 		33
(-3)
P 		43.9
(3)
P 		11
avr 28.7
(-3) 		42.7
(-0.8) 		37.9
(-1.5) 		66.4
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 97
(-0.5)
P 		47
(-3)
P 		51
(-2.8)
P 		78.6
(-1.4)
P 		165.1
(3)
P 		90.2
(-0.8)
P 		118
B 50.4
(-3)
P 		92.3
(-0.6)
P 		50.3
(-3)
P 		64.4
(-2.2)
P 		156.7
(3)
P 		62.7
(-2.3)
P 		106
C 72.3
(-1.8)
P 		44.5
(-2.9)
P 		68.7
(-1.9)
P 		116.8
(0.1)
P 		187.4
(3)
P 		43.1
(-3)
P 		144
avr 73.2
(-2.1) 		61.3
(-2.8) 		56.7
(-3) 		86.6
(-1.4) 		169.7
(3) 		65.3
(-2.5) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 13.3
(3)
P 		11.6
(0.1)
P 		9.8
(-3)
P 		12.7
(2)
P 		4
B 4.3
(-3)
A 		8.2
(-0.8)
A 		10.1
(0.3)
P 		14.7
(3)
P 		10
C 11.9
(3)
P 		11.8
(2.9)
A 		11.5
(2.5)
P 		7.4
(-3)
P 		5
avr 9.8
(-3) 		10.5
(-0.7) 		10.5
(-0.7) 		11.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 17.9
(-1.9)
P 		16.7
(-2.1)
P 		11.1
(-3)
P 		19.9
(-1.6)
P 		49.8
(3)
P 		22
(-1.3)
P 		39
B 17.5
(-2.4)
P 		30.7
(-0.8)
P 		12.2
(-3)
P 		17.1
(-2.4)
P 		63.7
(3)
P 		23.4
(-1.7)
P 		52
C 26.8
(-1.3)
P 		13.6
(-3)
P 		17.5
(-2.5)
P 		23.5
(-1.7)
P 		60.6
(3)
P 		14.4
(-2.9)
P 		47
avr 20.7
(-2) 		20.3
(-2.1) 		13.6
(-3) 		20.2
(-2.1) 		58
(3) 		19.9
(-2.1) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189059_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7448
Sequence Type Exemplar sequence
Representative Public ID F26A1.8 NCBI
Target Description F26A1.8 /REP_DB=WormBase Gene ID /WP=CE02689 /TR=Q19796 /GB=AAA68248.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Amine oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065593(11), NM_065596(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065593 NCBI Caenorhabditis elegans F26A1.6 (F26A1.6) mRNA, complete cds. 11/11 A 
NM_065596 NCBI Caenorhabditis elegans F26A1.8 (F26A1.8) mRNA, complete cds. 11/11 A 
SNAP00000001863 ENSEMBL cdna:SNAP chromosome:CEL140:III:4816001:4817039:-1 11/11 None
GENEFINDER00000001897 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4816001:4817039:-1 11/11 None
SNAP00000001867 ENSEMBL cdna:SNAP chromosome:CEL140:III:4820759:4822187:-1 11/11 None
GENEFINDER00000001886 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4820759:4822187:-1 11/11 None
F26A1.6 ENSEMBL cdna:known chromosome:CEL140:III:4816001:4817039:-1 gene:F26A1.6 11/11 A 
F26A1.8 ENSEMBL cdna:known chromosome:CEL140:III:4820759:4822187:-1 gene:F26A1.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4820758-4822187(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Amine oxidase
Ensembl F26A1.6
F26A1.8
Entrez Gene 184946 Entrez gene
184948 Entrez gene
SwissProt Q19792 EMBL-EBI
Q19796 EMBL-EBI
WormBase CE02687 Wormbase
CE02689 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4869 cysteine protease inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_497997 F26A1.8 [Caenorhabditis elegans] gb|AAA68248.1| Hypothetical protein F26A1.8 [Caenorhabditis elegans] 0.0
blast CAE71122 Hypothetical protein CBG17976 [Caenorhabditis briggsae] 0.0
blast CAB01963 Hypothetical protein C15A11.4 [Caenorhabditis elegans] ref|NP_492089.1| C15A11.4 [Caenorhabditis elegans] 1.0E-145
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497994.1 7 20-39,49-66,87-109,124-146,153-175,185-202,209-228
NP_497997.1 11 70-92,105-127,142-159,166-188,198-216,229-246,250-267,279-297,307-326,333-350,355-377
F26A1.6 7 20-39,49-66,87-109,124-146,153-175,185-202,209-228
F26A1.8 11 70-92,105-127,142-159,166-188,198-216,229-246,250-267,279-297,307-326,333-350,355-377
SNAP00000001863 6 20-39,49-66,87-109,124-146,159-181,201-223
GENEFINDER00000001897 7 20-39,49-66,87-109,124-146,153-175,185-202,209-228
SNAP00000001867 11 70-92,105-127,142-159,166-188,198-216,229-246,250-267,279-297,307-326,333-350,355-377
GENEFINDER00000001886 11 70-92,105-127,142-159,166-188,198-216,229-246,250-267,279-297,307-326,333-350,355-377
Sequence
Target Sequence 
>C. ELEGANS:189059_S_AT
tcttcgtttcaatttggacagcatttgcatttgcattgggaattttgaatgctcaaaaga
agagatcaacattccgtgaaattccagaattctgtgcatggaaaggatgggttctgttct
ttactggaattattggaggaatatttgatgcatttgctggatcaggaattgatatttgca
tcttttcagttataactctcttattccgtgtaactgaaaagactgcaactccaacaactg
ttgtactcaagggagttattgctgtttttggattctactacagagctgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGTTTCAATTTGGACAGCATT 180 617 608 Antisense
GAGATCAACATTCCGTGAAATTCCA 634 395 669 Antisense
GAAATTCCAGAATTCTGTGCATGGA 475 363 685 Antisense
GGATGGGTTCTGTTCTTTACTGGAA 59 515 712 Antisense
GATGCATTTGCTGGATCAGGAATTG 212 413 754 Antisense
ATTTGCATCTTTTCAGTTATAACTC 590 15 781 Antisense
ATAACTCTCTTATTCCGTGTAACTG 390 25 799 Antisense
AAAAGACTGCAACTCCAACAACTGT 151 131 824 Antisense
CAACAACTGTTGTACTCAAGGGAGT 446 189 839 Antisense
GGGAGTTATTGCTGTTTTTGGATTC 147 495 858 Antisense
TTTGGATTCTACTACAGAGCTGTTA 234 665 874 Antisense
Sequence Source Affymetrix Proprietary Database