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[189058_at] Amine oxidase

Description F26A1.8 /REP_DB=WormBase Gene ID /WP=CE02689 /TR=Q19796 /GB=AAA68248.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Amine oxidase
Cluster 6grp_high1_10_10 > 91      4grp_high_8_8 > 13      6grp_total > 93      4grp_total > 09      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 38
(-3)
A 		50.6
(-2.5)
P 		81.4
(-1.2)
P 		179.9
(3)
P 		142
B 30.1
(-3)
A 		68.7
(-1)
P 		35.5
(-2.7)
P 		147.9
(3)
P 		118
C 54.1
(-2.4)
P 		63.5
(-2.1)
A 		37.5
(-3)
P 		210.6
(3)
P 		173
avr 40.7
(-3) 		60.9
(-2.1) 		51.5
(-2.5) 		179.5
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 114.2
(-1.4)
P 		39.8
(-3)
P 		67.3
(-2.4)
M 		107.7
(-1.6)
P 		322.7
(3)
P 		109.9
(-1.5)
P 		283
B 93.7
(-1.7)
P 		86.2
(-1.8)
M 		34.6
(-3)
A 		146.2
(-0.5)
P 		297.3
(3)
P 		87.9
(-1.8)
P 		263
C 85.7
(-1.8)
P 		19.8
(-3)
A 		81
(-1.9)
P 		142.5
(-0.8)
P 		359.4
(3)
P 		127.2
(-1.1)
P 		340
avr 97.9
(-1.9) 		48.6
(-3) 		61
(-2.7) 		132.1
(-1.2) 		326.5
(3) 		108.3
(-1.7) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 13.8
(-1.9)
A 		11
(-3)
P 		21.3
(1)
P 		26.3
(3)
P 		15
B 9.6
(-2.6)
A 		17
(-0.7)
P 		8.2
(-3)
P 		31.5
(3)
P 		23
C 17.9
(-1.7)
P 		18.2
(-1.6)
A 		13.1
(-3)
P 		35.5
(3)
P 		22
avr 13.8
(-3) 		15.4
(-2.4) 		14.2
(-2.9) 		31.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 21.1
(-2.5)
P 		14.2
(-3)
P 		14.7
(-3)
M 		27.3
(-2.1)
P 		97.4
(3)
P 		26.8
(-2.1)
P 		83
B 32.6
(-1.7)
P 		28.7
(-1.9)
M 		8.4
(-3)
A 		38.7
(-1.4)
P 		120.8
(3)
P 		32.8
(-1.7)
P 		112
C 31.8
(-1.6)
P 		6
(-3)
A 		20.6
(-2.2)
P 		28.6
(-1.8)
P 		116.3
(3)
P 		42.6
(-1)
P 		110
avr 28.5
(-2.1) 		16.3
(-2.9) 		14.6
(-3) 		31.5
(-2) 		111.5
(3) 		34.1
(-1.8) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189058_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7448
Sequence Type Exemplar sequence
Representative Public ID F26A1.8 NCBI
Target Description F26A1.8 /REP_DB=WormBase Gene ID /WP=CE02689 /TR=Q19796 /GB=AAA68248.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Amine oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065596(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065596 NCBI Caenorhabditis elegans F26A1.8 (F26A1.8) mRNA, complete cds. 11/11 A 
SNAP00000001867 ENSEMBL cdna:SNAP chromosome:CEL140:III:4820759:4822187:-1 11/11 None
GENEFINDER00000001886 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4820759:4822187:-1 11/11 None
F26A1.8 ENSEMBL cdna:known chromosome:CEL140:III:4820759:4822187:-1 gene:F26A1.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4820758-4822187(-) 100.0 100.0
Public Domain and Genome References
Gene Title Amine oxidase
Ensembl F26A1.8
Entrez Gene 184948 Entrez gene
SwissProt Q19796 EMBL-EBI
WormBase CE02689 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4869 cysteine protease inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_497997 F26A1.8 [Caenorhabditis elegans] gb|AAA68248.1| Hypothetical protein F26A1.8 [Caenorhabditis elegans] 0.0
blast CAE71122 Hypothetical protein CBG17976 [Caenorhabditis briggsae] 0.0
blast CAB01963 Hypothetical protein C15A11.4 [Caenorhabditis elegans] ref|NP_492089.1| C15A11.4 [Caenorhabditis elegans] 1.0E-145
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497997.1 11 70-92,105-127,142-159,166-188,198-216,229-246,250-267,279-297,307-326,333-350,355-377
F26A1.8 11 70-92,105-127,142-159,166-188,198-216,229-246,250-267,279-297,307-326,333-350,355-377
SNAP00000001867 11 70-92,105-127,142-159,166-188,198-216,229-246,250-267,279-297,307-326,333-350,355-377
GENEFINDER00000001886 11 70-92,105-127,142-159,166-188,198-216,229-246,250-267,279-297,307-326,333-350,355-377
Sequence
Target Sequence 
>C. ELEGANS:189058_AT
gatactttgcagtttcgattccagtttctgctgcaacaggaccaatcggatcattcttgg
gatcacatcttcatcgtcaagttgtggctggatttgtgtatgttcttgaggcaattgctc
ttgttggattcctctgtacaaagcctgcatggcaacttattgcagtcggaggttgcatca
tccttggtggatttgtcttcttctcggcactatccaaagctggatctattctgatgaacc
gtattgaaatccgccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACTTTGCAGTTTCGATTCCAGT 685 423 929 Antisense
GATTCCAGTTTCTGCTGCAACAGGA 318 433 945 Antisense
GCAACAGGACCAATCGGATCATTCT 73 319 961 Antisense
CTTGGGATCACATCTTCATCGTCAA 654 217 984 Antisense
GTGGCTGGATTTGTGTATGTTCTTG 474 491 1012 Antisense
ATTGCTCTTGTTGGATTCCTCTGTA 278 7 1042 Antisense
TTCCTCTGTACAAAGCCTGCATGGC 650 699 1057 Antisense
AGTCGGAGGTTGCATCATCCTTGGT 496 59 1092 Antisense
ATCCTTGGTGGATTTGTCTTCTTCT 347 39 1108 Antisense
TTCTCGGCACTATCCAAAGCTGGAT 518 687 1129 Antisense
GATGAACCGTATTGAAATCCGCCAA 41 411 1161 Antisense
Sequence Source Affymetrix Proprietary Database