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[189057_at] 7TM chemoreceptor, str family

Description F26G5.2 /REP_DB=WormBase Gene ID /WP=CE24920 /TR=O16935 /GB=AAC48036.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 52      4grp_total > 34      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 6.4
(-3)
A 		38.6
(3)
A 		13
(-1.8)
A 		22.3
(-0)
A 		32
B 7.9
(3)
A 		5.8
(-3)
A 		7.3
(1.3)
A 		7.6
(2.1)
A 		2
C 6.3
(-3)
A 		8.9
(0)
A 		9.4
(0.6)
A 		11.5
(3)
A 		5
avr 6.9
(-3) 		17.8
(3) 		9.9
(-1.3) 		13.8
(0.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 7.6
(-0.6)
A 		4.4
(-3)
A 		12.4
(3)
A 		7.7
(-0.5)
A 		9.8
(1.1)
A 		5
(-2.6)
A 		8
B 9.8
(3)
A 		6.8
(-0.8)
A 		5.9
(-1.9)
A 		5
(-3)
A 		5.3
(-2.6)
A 		6.2
(-1.5)
A 		5
C 4.3
(-2.6)
A 		8.5
(0.3)
A 		10.8
(1.8)
A 		12.5
(3)
A 		3.7
(-3)
A 		9.7
(1.1)
A 		9
avr 7.2
(-1.4) 		6.6
(-2.5) 		9.7
(3) 		8.4
(0.7) 		6.3
(-3) 		7
(-1.8) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.3
(-3)
A 		8.4
(3)
A 		3.4
(-1.9)
A 		3.3
(-2)
A 		6
B 2.5
(3)
A 		1.4
(-3)
A 		1.7
(-1.4)
A 		1.6
(-1.9)
A 		1
C 2.1
(-2.1)
A 		2.6
(0)
A 		3.3
(3)
A 		1.9
(-3)
A 		1
avr 2.3
(-3) 		4.1
(3) 		2.8
(-1.3) 		2.3
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.4
(-2.3)
A 		1.6
(-1.7)
A 		2.7
(2)
A 		2
(-0.3)
A 		3
(3)
A 		1.2
(-3)
A 		2
B 3.4
(3)
A 		2.3
(-0.1)
A 		1.4
(-2.7)
A 		1.3
(-3)
A 		2.1
(-0.7)
A 		2.3
(-0.1)
A 		2
C 1.6
(-1.9)
A 		2.6
(1)
A 		2.7
(1.3)
A 		2.5
(0.7)
A 		1.2
(-3)
A 		3.3
(3)
A 		2
avr 2.1
(0) 		2.2
(1.5) 		2.3
(3) 		1.9
(-3) 		2.1
(0) 		2.3
(3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15590
Sequence Type Exemplar sequence
Representative Public ID F26G5.2 NCBI
Target Description F26G5.2 /REP_DB=WormBase Gene ID /WP=CE24920 /TR=O16935 /GB=AAC48036.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071933(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071933 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-208) (str-208) mRNA, complete cds. 11/11 None
F26G5.2 ENSEMBL cdna:known chromosome:CEL140:V:4956643:4958386:1 gene:F26G5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021537 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021546 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4956642-4958386(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-208
Ensembl F26G5.2
Entrez Gene 184996 Entrez gene
SwissProt O16935 EMBL-EBI
WormBase CE09699 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504334 Seven TM Receptor family member (str-208) [Caenorhabditis elegans] gb|AAC48036.3| Seven tm receptor protein 208 [Caenorhabditis elegans] 1.0E-148
blast NP_504334 Seven TM Receptor family member (str-208) [Caenorhabditis elegans] gb|AAC48036.3| Seven tm receptor protein 208 [Caenorhabditis elegans] 1.0E-146
blast NP_504331 Seven TM Receptor family member (str-209) [Caenorhabditis elegans] gb|AAC48038.1| Seven tm receptor protein 209 [Caenorhabditis elegans] 1.0E-86
blast NP_504331 Seven TM Receptor family member (str-209) [Caenorhabditis elegans] gb|AAC48038.1| Seven tm receptor protein 209 [Caenorhabditis elegans] 1.0E-85
blast NP_504332 Seven TM Receptor family member (str-207) [Caenorhabditis elegans] gb|AAC48037.1| Seven tm receptor protein 207 [Caenorhabditis elegans] 7.0E-76
blast NP_504332 Seven TM Receptor family member (str-207) [Caenorhabditis elegans] gb|AAC48037.1| Seven tm receptor protein 207 [Caenorhabditis elegans] 2.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.1E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504334.2 7 10-31,43-62,89-111,132-154,202-224,249-271,286-308
F26G5.2 7 10-31,44-66,93-115,136-158,206-228,253-275,290-312
Sequence
Target Sequence 
>C. ELEGANS:189057_AT
atgtggggtattgccgcgtattttccttgctcaccgcgaccgagtactgatgcgttccta
agagaatttattttgaaagagtttggtttggaggtgacagagaatgtatacattgcgccg
tatttttatgaaaaaaatgaagatggtactacggacatttactatccatcttttgtgaca
atttttgcaacaactgtgactgtgataatttccgtgtctgtcattttttatttcggtttt
aaatgctacacatcccttcagaaattcaaagaaatcgaatcgtcgaaacacattcaaaat
ctgcaaaatcaattgttctattcattggtggctcaaacactaattccattatttctggtg
catactccagcatttgctttatacacattttcatttcttcgaataaatatcggctcctta
actggaattaccacaataacaactgccatttttcctgcacttgatcctcttccaacacta
attattgtaagaagctatcgaaatgcaattcgagaatcgatttcttccatattcaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGGGGTATTGCCGCGTATTTTC 567 47 457 Antisense
CTCACCGCGACCGAGTACTGATGCG 358 229 486 Antisense
GGACATTTACTATCCATCTTTTGTG 60 525 609 Antisense
GATAATTTCCGTGTCTGTCATTTTT 158 423 660 Antisense
ATGCTACACATCCCTTCAGAAATTC 641 41 699 Antisense
GGTGCATACTCCAGCATTTGCTTTA 58 501 813 Antisense
GCTTTATACACATTTTCATTTCTTC 160 305 832 Antisense
ATCGGCTCCTTAACTGGAATTACCA 599 21 865 Antisense
TAACAACTGCCATTTTTCCTGCACT 700 639 893 Antisense
TGATCCTCTTCCAACACTAATTATT 582 565 918 Antisense
AATCGATTTCTTCCATATTCAATTC 381 169 971 Antisense
Sequence Source Affymetrix Proprietary Database