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[189056_at]

Description W03F9.7 /REP_DB=WormBase Gene ID /WP=CE25137 /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor (ST.LOUIS) TR:O16994 protein_id:AAG24209.1
Cluster 6grp_total > 08      4grp_total > 09      6grp_cgc > 26      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 2.6
(-3)
A 		4.2
(-1.3)
A 		7.8
(2.4)
A 		8.4
(3)
A 		6
B 8
(-0.1)
A 		10.1
(3)
A 		8.1
(0.1)
A 		6
(-3)
A 		4
C 2.7
(-3)
A 		5.1
(-2.8)
A 		4.8
(-2.8)
A 		81.9
(3)
A 		79
avr 4.4
(-3) 		6.5
(-2.5) 		6.9
(-2.5) 		32.1
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 7
(2.2)
A 		4.9
(-1.8)
A 		4.5
(-2.6)
A 		4.5
(-2.6)
A 		4.3
(-3)
A 		7.4
(3)
A 		3
B 5
(1.3)
A 		2.6
(-2.8)
A 		2.5
(-3)
A 		6
(3)
A 		3.6
(-1.1)
A 		4
(-0.4)
A 		4
C 6.4
(0.4)
A 		8.2
(2.6)
A 		7.1
(1.3)
A 		8.5
(3)
A 		3.7
(-3)
A 		4.7
(-1.8)
A 		5
avr 6.1
(2.5) 		5.2
(0.3) 		4.7
(-1) 		6.3
(3) 		3.9
(-3) 		5.4
(0.8) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1
(-2.5)
A 		0.9
(-3)
A 		2
(3)
A 		1.2
(-1.4)
A 		1
B 2.5
(3)
A 		2.5
(3)
A 		1.9
(-0)
A 		1.3
(-3)
A 		1
C 0.9
(-3)
A 		1.5
(-2.7)
A 		1.7
(-2.6)
A 		13.8
(3)
A 		13
avr 1.5
(-3) 		1.6
(-2.8) 		1.9
(-2.4) 		5.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.3
(-0.8)
A 		1.8
(3)
A 		1
(-3)
A 		1.1
(-2.3)
A 		1.3
(-0.8)
A 		1.8
(3)
A 		1
B 1.7
(3)
A 		0.9
(-1.4)
A 		0.6
(-3)
A 		1.6
(2.5)
A 		1.5
(1.9)
A 		1.5
(1.9)
A 		1
C 2.4
(2.5)
A 		2.5
(3)
A 		1.8
(-0.2)
A 		1.7
(-0.7)
A 		1.2
(-3)
A 		1.6
(-1.2)
A 		1
avr 1.8
(3) 		1.7
(2.1) 		1.1
(-3) 		1.5
(0.4) 		1.3
(-1.3) 		1.6
(1.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15657
Sequence Type Exemplar sequence
Representative Public ID W03F9.7 NCBI
Target Description W03F9.7 /REP_DB=WormBase Gene ID /WP=CE25137 /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor (ST.LOUIS) TR:O16994 protein_id:AAG24209.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W03F9.7 ENSEMBL cdna:pseudogene chromosome:CEL140:V:142875:144445:1 gene:W03F9.7 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001175 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:142874-144497(+) 100.0 100.0
Public Domain and Genome References
Ensembl W03F9.7
Sequence
Target Sequence 
>C. ELEGANS:189056_AT
cctacacttttcacacattttctgcattttcagtaccattttatatatttggtggttact
gcattgtgttcaagaccccaagtcaaatgtctgtttatagaaaaccactgctgaatattc
atttttggacatgttttgtggatattatcctcaatactcttgcaactccatatttatttc
ttccggctcttgccggattttccgtaggattattaaattttttaagagtacccgaaattg
ttcaaacctggatgggattacagtgtgttaatataatgatgatatccataacattaatac
tagaaaatcggcacaattcaattccattcaatcgatttcaaacttcgagaaaattatcca
gattaatatgctacacgattcgaatcctcatgggagtaacctgggctttattgattttta
ttcttcaacccgaaaatcaagagctcgcaatgctacaagtacttaaatatattccatgtc
caactgagcagtttttcacttttcccgcaaccatattgttgcaaatttcgattcctgtag
ttttcctgttaccagcatttttttatattggattctccgttgtcaccggctattata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTACACTTTTCACACATTTTCTGC 200 269 98 Antisense
GCATTGTGTTCAAGACCCCAAGTCA 610 307 158 Antisense
TATCCTCAATACTCTTGCAACTCCA 131 659 243 Antisense
GCAACTCCATATTTATTTCTTCCGG 131 321 259 Antisense
GCTCTTGCCGGATTTTCCGTAGGAT 123 299 283 Antisense
GCTACACGATTCGAATCCTCATGGG 301 303 467 Antisense
TCCTCATGGGAGTAACCTGGGCTTT 156 593 482 Antisense
CACTTTTCCCGCAACCATATTGTTG 61 197 594 Antisense
ATTTCGATTCCTGTAGTTTTCCTGT 438 17 622 Antisense
GTAGTTTTCCTGTTACCAGCATTTT 250 457 634 Antisense
TTCTCCGTTGTCACCGGCTATTATA 618 691 670 Antisense
Sequence Source Affymetrix Proprietary Database