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[189055_at] 7TM chemoreceptor, str family

Description F26G5.4 /REP_DB=WormBase Gene ID /WP=CE09701 /TR=O16932 /GB=AAC48037.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 92      4grp_total > 19      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 1.5
(-3)
A 		8.1
(3)
A 		2.7
(-1.9)
A 		3.8
(-0.9)
A 		7
B 6.7
(3)
A 		2
(-3)
A 		2.6
(-2.2)
A 		3.7
(-0.8)
A 		5
C 1.9
(-3)
A 		4.5
(-2.3)
A 		1.8
(-3)
A 		24.3
(3)
A 		23
avr 3.4
(-2.3) 		4.9
(-1.2) 		2.4
(-3) 		10.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 5
(3)
A 		2
(-1.7)
A 		2.1
(-1.6)
A 		1.2
(-3)
A 		2.7
(-0.6)
A 		2
(-1.7)
A 		4
B 2.1
(-1.8)
A 		4.6
(1.4)
A 		1.5
(-2.5)
A 		3.5
(-0)
A 		5.9
(3)
A 		1.1
(-3)
A 		5
C 2.7
(-1.8)
A 		3.9
(3)
A 		3.2
(0.2)
A 		3.3
(0.6)
A 		2.6
(-2.2)
A 		2.4
(-3)
A 		2
avr 3.3
(1.7) 		3.5
(2.4) 		2.3
(-1.4) 		2.7
(-0.2) 		3.7
(3) 		1.8
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.5
(-3)
A 		1.8
(3)
A 		0.7
(-2.1)
A 		0.6
(-2.5)
A 		1
B 2.1
(3)
A 		0.5
(-3)
A 		0.6
(-2.6)
A 		0.8
(-1.9)
A 		2
C 0.6
(-3)
A 		1.3
(-1.8)
A 		0.6
(-3)
A 		4.1
(3)
A 		4
avr 1.1
(-0.5) 		1.2
(-0) 		0.6
(-3) 		1.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(3)
A 		0.7
(1)
A 		0.5
(-1)
A 		0.3
(-3)
A 		0.8
(2)
A 		0.5
(-1)
A 		1
B 0.7
(-2.1)
A 		1.5
(0.3)
A 		0.4
(-3)
A 		0.9
(-1.5)
A 		2.4
(3)
A 		0.4
(-3)
A 		2
C 1
(0.6)
A 		1.2
(3)
A 		0.8
(-1.8)
A 		0.7
(-3)
A 		0.8
(-1.8)
A 		0.8
(-1.8)
A 		1
avr 0.9
(-0.4) 		1.1
(1.3) 		0.6
(-3) 		0.6
(-3) 		1.3
(3) 		0.6
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189055_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15132
Sequence Type Exemplar sequence
Representative Public ID F26G5.4 NCBI
Target Description F26G5.4 /REP_DB=WormBase Gene ID /WP=CE09701 /TR=O16932 /GB=AAC48037.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071931(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071931 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-207) (str-207) mRNA, complete cds. 11/11 None
SNAP00000021535 ENSEMBL cdna:SNAP chromosome:CEL140:V:4951548:4952849:1 11/11 None
F26G5.4 ENSEMBL cdna:known chromosome:CEL140:V:4951548:4952849:1 gene:F26G5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021546 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4951547-4952849(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-207
Ensembl F26G5.4
Entrez Gene 184997 Entrez gene
SwissProt O16932 EMBL-EBI
WormBase CE09701 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504332 Seven TM Receptor family member (str-207) [Caenorhabditis elegans] gb|AAC48037.1| Seven tm receptor protein 207 [Caenorhabditis elegans] 0.0
blast NP_504331 Seven TM Receptor family member (str-209) [Caenorhabditis elegans] gb|AAC48038.1| Seven tm receptor protein 209 [Caenorhabditis elegans] 5.0E-98
blast NP_504334 Seven TM Receptor family member (str-208) [Caenorhabditis elegans] gb|AAC48036.3| Seven tm receptor protein 208 [Caenorhabditis elegans] 1.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.3E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504332.1 7 10-30,43-65,88-110,131-153,201-223,248-265,275-297
F26G5.4 7 10-30,43-65,88-110,131-153,201-223,248-265,275-297
SNAP00000021535 7 10-30,43-65,88-110,131-153,201-223,248-265,275-297
Sequence
Target Sequence 
>C. ELEGANS:189055_AT
ggtggtttgtaacatactttccgtgttccccaaggccgagtgccgatgaatatttgagaa
acgaaataatgaatgtcttcaatctagatattgacaaaaacctatatattgcaccgtact
tctacgaaaccaattccgatggaatcacagatatctactatccatcattcattgcaatta
ttgtgaatattcttataacaatagtttcattaataactgtattttactttggcttcagat
gctatatatcacttcaaaagatctgcaaacaaaatgtttctcaaaacactcgtgggcttc
aaaaacaattattctactcattgattgcacaaactttgattccattatttcttatgtaca
ttccaggatgcgcgatgtttttattgtcatttttaacaattgacgtaggctcttttactg
ggattgtcactgtgacaattgccctgtttcctgcggttgacccacttccaacattgatta
tggtgaaatgctatagaaattcacttcgatcctatcttcgtgtattcttgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGTTTGTAACATACTTTCCGTG 376 495 446 Antisense
TTCCCCAAGGCCGAGTGCCGATGAA 158 697 471 Antisense
AACCTATATATTGCACCGTACTTCT 657 145 544 Antisense
GTACTTCTACGAAACCAATTCCGAT 153 459 561 Antisense
CTACTATCCATCATTCATTGCAATT 288 227 600 Antisense
TGTATTTTACTTTGGCTTCAGATGC 240 561 663 Antisense
GTTTCTCAAAACACTCGTGGGCTTC 681 447 721 Antisense
ATTCCAGGATGCGCGATGTTTTTAT 460 7 805 Antisense
AGGCTCTTTTACTGGGATTGTCACT 105 49 852 Antisense
GAAATTCACTTCGATCCTATCTTCG 613 363 941 Antisense
GATCCTATCTTCGTGTATTCTTGAG 618 415 953 Antisense
Sequence Source Affymetrix Proprietary Database