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[189054_at] casein kinase

Description C39H7.1 /REP_DB=WormBase Gene ID /WP=CE06942 /TR=Q18553 /GB=AAB00674.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=casein kinase
Cluster 6grp_total > 88      4grp_total > 27      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 13.2
(-0.7)
A 		24
(3)
A 		6.7
(-3)
A 		17.3
(0.7)
A 		17
B 33.4
(-0.7)
A 		22.7
(-3)
A 		35
(-0.3)
A 		50.3
(3)
A 		28
C 26.4
(-0.7)
A 		59.9
(3)
A 		4.9
(-3)
A 		48.6
(1.8)
A 		55
avr 24.3
(-0.7) 		35.5
(2.2) 		15.5
(-3) 		38.7
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 518
1 2 3 4 5 6 range
A 24.9
(-2.8)
A 		18.5
(-2.8)
A 		4.8
(-3)
A 		33
(-2.7)
A 		289.2
(0.3)
P 		519.5
(3)
P 		515
B 25.3
(-2.9)
A 		16.9
(-3)
A 		34.6
(-2.7)
A 		16.7
(-3)
A 		304
(1.1)
P 		432.8
(3)
P 		416
C 22.2
(-2.8)
A 		23.7
(-2.8)
A 		4.3
(-3)
A 		35.2
(-2.6)
A 		310
(0.5)
P 		522.3
(3)
P 		518
avr 24.1
(-2.9) 		19.7
(-2.9) 		14.6
(-3) 		28.3
(-2.8) 		301.1
(0.6) 		491.5
(3) 		477
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.8
(2.3)
A 		5.2
(3)
A 		1.8
(-3)
A 		2.5
(-1.8)
A 		3
B 10.6
(2.9)
A 		5.6
(-3)
A 		8.1
(-0.1)
A 		10.7
(3)
A 		5
C 8.7
(-0.3)
A 		17.2
(3)
A 		1.7
(-3)
A 		8.2
(-0.5)
A 		16
avr 8
(1.6) 		9.3
(3) 		3.9
(-3) 		7.1
(0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 4.6
(-2.8)
A 		6.6
(-2.7)
A 		1.1
(-3)
A 		8.4
(-2.7)
A 		87.3
(1.1)
P 		126.5
(3)
P 		125
B 8.8
(-2.8)
A 		5.6
(-3)
A 		8.4
(-2.8)
A 		4.4
(-3)
A 		123.5
(1.6)
P 		161.4
(3)
P 		157
C 8.2
(-2.8)
A 		7.2
(-2.8)
A 		1.1
(-3)
A 		7.1
(-2.8)
A 		100.3
(0.4)
P 		174.9
(3)
P 		174
avr 7.2
(-2.9) 		6.5
(-2.9) 		3.5
(-3) 		6.6
(-2.9) 		103.7
(1) 		154.3
(3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10404
Sequence Type Exemplar sequence
Representative Public ID C39H7.1 NCBI
Target Description C39H7.1 /REP_DB=WormBase Gene ID /WP=CE06942 /TR=Q18553 /GB=AAB00674.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=casein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068436(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068436 NCBI Caenorhabditis elegans C39H7.1 (C39H7.1) mRNA, complete cds. 11/11 A 
SNAP00000020750 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5631966:5633306:1 11/11 None
GENEFINDER00000020757 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5631966:5633306:1 11/11 None
C39H7.1 ENSEMBL cdna:known chromosome:CEL140:IV:5631916:5633306:1 gene:C39H7.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5631971-5633312(+) 100.0 100.0
chrIV:13472546-13473910(+) 91.91 92.34
Public Domain and Genome References
Gene Title casein kinase
Ensembl C39H7.1
Entrez Gene 177341 Entrez gene
SwissProt Q18553 EMBL-EBI
WormBase CE06942 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00674 Hypothetical protein C39H7.1 [Caenorhabditis elegans] ref|NP_500837.1| C39H7.1 [Caenorhabditis elegans] 0.0
blast CAA16345 Hypothetical protein Y38H8A.3 [Caenorhabditis elegans] ref|NP_502596.1| Y38H8A.3 [Caenorhabditis elegans] 1.0E-180
blast CAE67138 Hypothetical protein CBG12561 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.5E-5
Pfam IPR000719 EMBL-EBI Protein kinase 1.3E-4
Sequence
Target Sequence 
>C. ELEGANS:189054_AT
cggtgggcacatgtcgatgggttgctcgattggaatcggcattcaatcgttggaggcact
cgaggatcttcataacattggataccttcatcgtgacgtcaaacccggaaattacacgat
tggacgtcccgagttgaacgagattcgcaaggtctacattttggattttggaatgtgcag
aaagtttactgggaatgatggaaccattagaaagccacgccaagctgctggttttcgtgg
aactgtcaagtacgctccaatcagttgccatcttcagagagaactttgccgcaaggacga
cttggagacctggatgtacatgcaggttgaactgtcgcacggaacaattccatggcaaca
tatctctgacatgaaccaagttggtcaggccaaacaagcgatccgtaacaaccttgggac
cctgttcccaccgccatgcccacaacaattccaggatattatgcgtatggttgatgcaat
gaaatactatgatgcacccaactatcaagcaatatacggaatgatgcgtcaagcttatgg
tgcttgcggatccaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGTGGGCACATGTCGATGGGTTGC 612 241 327 Antisense
GGCATTCAATCGTTGGAGGCACTCG 554 537 364 Antisense
GAGGCACTCGAGGATCTTCATAACA 499 405 379 Antisense
TTGGATACCTTCATCGTGACGTCAA 392 709 404 Antisense
GACGTCCCGAGTTGAACGAGATTCG 318 367 449 Antisense
GCTGCTGGTTTTCGTGGAACTGTCA 335 295 550 Antisense
TGCAGGTTGAACTGTCGCACGGAAC 556 557 647 Antisense
ATTCCATGGCAACATATCTCTGACA 289 7 673 Antisense
TGGTCAGGCCAAACAAGCGATCCGT 165 553 708 Antisense
CCATGCCCACAACAATTCCAGGATA 7 273 760 Antisense
GCTTATGGTGCTTGCGGATCCAACG 449 305 859 Antisense
Sequence Source Affymetrix Proprietary Database