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[189053_s_at] DNAJ protein

Description C01G10.12 /REP_DB=WormBase Gene ID /WP=CE07821 /TR=Q93171 /GB=CAB02713.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=DNAJ protein
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 63      4grp_highest_8_8 > 15      4grp_high_8_8 > 21      6grp_highest_nonorm > 72      6grp_total > 64      4grp_total > 10      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 453
1 2 3 4 range
A 245.2
(-3)
P 		308.1
(-1.6)
P 		255.7
(-2.8)
P 		516.6
(3)
P 		271
B 342.8
(-3)
P 		436.4
(2.3)
P 		384.3
(-0.6)
P 		448.5
(3)
P 		106
C 339.6
(-2.3)
P 		315.1
(-2.6)
P 		291
(-3)
P 		698.6
(3)
P 		408
avr 309.2
(-3) 		353.2
(-1.9) 		310.3
(-3) 		554.6
(3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 362.8
(-1.9)
P 		401.6
(-0.6)
P 		508.5
(3)
P 		480.3
(2.1)
P 		330.2
(-3)
P 		506.8
(2.9)
P 		178
B 357.1
(-3)
P 		508.8
(1.6)
P 		556.2
(3)
P 		387.4
(-2.1)
P 		394.5
(-1.9)
P 		375.8
(-2.4)
P 		199
C 303.3
(-3)
P 		374.4
(-0.6)
P 		430.7
(1.3)
P 		479.9
(3)
P 		336
(-1.9)
P 		438.1
(1.6)
P 		177
avr 341.1
(-3) 		428.3
(0.3) 		498.5
(3) 		449.2
(1.1) 		353.6
(-2.5) 		440.2
(0.8) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 89.3
(3)
P 		66.9
(-3)
P 		66.9
(-3)
P 		75.6
(-0.7)
P 		22
B 109.3
(3)
P 		107.8
(2.6)
P 		89.1
(-3)
P 		95.6
(-1.1)
P 		20
C 112.4
(1.8)
P 		90.6
(-3)
P 		101.4
(-0.6)
P 		117.8
(3)
P 		27
avr 103.7
(3) 		88.4
(-2.1) 		85.8
(-3) 		96.3
(0.5) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 66.9
(-3)
P 		142.8
(3)
P 		110.8
(0.5)
P 		121.8
(1.3)
P 		99.6
(-0.4)
P 		123.4
(1.5)
P 		76
B 124.3
(-1)
P 		169.3
(3)
P 		135.1
(-0.1)
P 		102.6
(-3)
P 		160.3
(2.2)
P 		140.1
(0.4)
P 		67
C 112.4
(-1.1)
P 		114.2
(-0.9)
P 		109.6
(-1.4)
P 		96.5
(-3)
P 		108.7
(-1.5)
P 		146.7
(3)
P 		50
avr 101.2
(-3) 		142.1
(3) 		118.5
(-0.5) 		107
(-2.1) 		122.9
(0.2) 		136.7
(2.2) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189053_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14768
Sequence Type Exemplar sequence
Representative Public ID C01G10.12 NCBI
Target Description C01G10.12 /REP_DB=WormBase Gene ID /WP=CE07821 /TR=Q93171 /GB=CAB02713.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=DNAJ protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074310(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074310 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-3) (dnj-3) mRNA, complete cds. 11/11 None
C01G10.12 ENSEMBL cdna:known chromosome:CEL140:V:15071276:15072093:1 gene:C01G10.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004615 8/11 Cross Hyb Matching Probes None
GENEFINDER00000004631 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15071275-15072054(+) 100.0 100.0
Public Domain and Genome References
Gene Title DNAJ protein
Gene Symbol dnj-3
Ensembl C01G10.12
Entrez Gene 182084 Entrez gene
SwissProt Q93171 EMBL-EBI
WormBase CE07821 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02713 Hypothetical protein C01G10.12 [Caenorhabditis elegans] ref|NP_506711.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-3) [Caenorhabditis elegans] 2.0E-95
blast CAE66324 Hypothetical protein CBG11575 [Caenorhabditis briggsae] 2.0E-75
blast CAG09777 unnamed protein product [Tetraodon nigroviridis] 4.0E-9
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 9.9999998245167E-15
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 7.7E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506711.1 1 160-179
C01G10.12 1 160-179
Sequence
Target Sequence 
>C. ELEGANS:189053_S_AT
gataattggagtttctgcttctgccacgagacaggaaattagagatgcatttttgaaaaa
gaccaagcagcttcacccagaccagtctcgaaaatcttcaaaaagtgattcgcgagttgg
atgggctactggttcttctgaaaccgaacaatttatgcttgtgaaggaggcgtatgatgt
tctcagaaatgaagaaaaacgaaaagaatacgatttagcgtttagtagagaaggcggttt
tttaatggaggcgacgcataaaactcaagaaatgtcaactcagaggaggaatattcaaag
agctgaatggagtgctgatgtgatacctgatgcaaaaaggaattcgaaaaaagttgtata
ttcccattttagaaatcccgaagatgaatacctccgggaaaagcagaaaaatcgaatgct
cgtcgttttagcagcaactgtcatggctttaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAATTGGAGTTTCTGCTTCTGCC 166 423 75 Antisense
TTCTGCTTCTGCCACGAGACAGGAA 339 693 87 Antisense
AAAAAGACCAAGCAGCTTCACCCAG 15 131 130 Antisense
CTTCACCCAGACCAGTCTCGAAAAT 26 221 145 Antisense
GCGAGTTGGATGGGCTACTGGTTCT 126 291 186 Antisense
GGGCTACTGGTTCTTCTGAAACCGA 436 481 197 Antisense
GAAGGAGGCGTATGATGTTCTCAGA 111 335 237 Antisense
GGAGTGCTGATGTGATACCTGATGC 209 517 383 Antisense
GAAATCCCGAAGATGAATACCTCCG 282 361 446 Antisense
GAATGCTCGTCGTTTTAGCAGCAAC 296 331 488 Antisense
TAGCAGCAACTGTCATGGCTTTAAT 689 651 503 Antisense
Sequence Source Affymetrix Proprietary Database