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[189052_s_at] D52 protein

Description F13E6.1 /REP_DB=WormBase Gene ID /WP=CE03198 /TR=SW:P55326 /GB=CAA92122.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=D52 protein
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 36      6grp_total > 60      4grp_total > 61      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1055
1 2 3 4 range
A 3480.2
(1.4)
P 		3747.1
(3)
P 		3554.7
(1.8)
P 		2755.5
(-3)
P 		992
B 3568.9
(3)
P 		3407.9
(1.5)
P 		3414.3
(1.5)
P 		2929.3
(-3)
P 		640
C 3605
(3)
P 		3041.9
(-0.7)
P 		3413.4
(1.7)
P 		2692
(-3)
P 		913
avr 3551.4
(3) 		3399
(1.8) 		3460.8
(2.3) 		2792.3
(-3) 		759

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1830
1 2 3 4 5 6 range
A 3749.4
(-0.4)
P 		4000.7
(0.8)
P 		3207.5
(-3)
P 		4447.1
(3)
P 		3592.6
(-1.1)
P 		3636
(-0.9)
P 		1240
B 3922.6
(1.5)
P 		3206.5
(-1.3)
P 		4164.7
(2.4)
P 		4321.3
(3)
P 		3526
(-0.1)
P 		2775.3
(-3)
P 		1546
C 4291.7
(1.6)
P 		3260
(-3)
P 		4605.4
(3)
P 		4347.1
(1.8)
P 		3781.2
(-0.7)
P 		3427.7
(-2.3)
P 		1345
avr 3987.9
(0.9) 		3489.1
(-1.8) 		3992.5
(0.9) 		4371.8
(3) 		3633.3
(-1.1) 		3279.7
(-3) 		1092
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 864
1 2 3 4 range
A 1267.1
(3)
P 		813.4
(-0.2)
P 		929.3
(0.7)
P 		403.3
(-3)
P 		864
B 1138.1
(3)
P 		841.7
(-0.5)
P 		791.2
(-1.1)
P 		624.2
(-3)
P 		514
C 1193.4
(3)
P 		874.5
(0.4)
P 		1189.7
(3)
P 		453.9
(-3)
P 		740
avr 1199.5
(3) 		843.2
(-0) 		970.1
(1) 		493.8
(-3) 		706

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 900
1 2 3 4 5 6 range
A 691.2
(-3)
P 		1422.9
(3)
P 		698.5
(-2.9)
P 		1127.9
(0.6)
P 		1084.1
(0.2)
P 		885.3
(-1.4)
P 		732
B 1364.9
(2)
P 		1067.3
(-2.2)
P 		1011.3
(-3)
P 		1144.6
(-1.1)
P 		1432.6
(3)
P 		1034.9
(-2.7)
P 		421
C 1590.8
(3)
P 		994.7
(-2)
P 		1172.1
(-0.5)
P 		874.2
(-3)
P 		1223.6
(-0.1)
P 		1147.4
(-0.7)
P 		717
avr 1215.6
(2.3) 		1161.6
(1.2) 		960.6
(-3) 		1048.9
(-1.1) 		1246.8
(3) 		1022.5
(-1.7) 		286
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189052_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16840
Sequence Type Exemplar sequence
Representative Public ID F13E6.1 NCBI
Target Description F13E6.1 /REP_DB=WormBase Gene ID /WP=CE03198 /TR=SW:P55326 /GB=CAA92122.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=D52 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077386 NCBI Caenorhabditis elegans F13E6.1 (F13E6.1) mRNA, complete cds. 11/11 None
SNAP00000007369 ENSEMBL cdna:SNAP chromosome:CEL140:X:10675923:10677026:-1 11/11 None
GENEFINDER00000007380 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10675923:10677026:-1 11/11 None
F13E6.1 ENSEMBL cdna:known chromosome:CEL140:X:10675631:10677034:-1 gene:F13E6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10675922-10677026(-) 100.0 100.0
Public Domain and Genome References
Gene Title D52 protein
Ensembl F13E6.1
Entrez Gene 181265 Entrez gene
SwissProt P55326 EMBL-EBI
WormBase CE31474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92122 Hypothetical protein F13E6.1 [Caenorhabditis elegans] ref|NP_509787.2| F13E6.1 [Caenorhabditis elegans] sp|P55326|YZG1_CAEEL Hypothetical protein F13E6.1 in chromosome X 7.0E-90
blast CAE60814 Hypothetical protein CBG04517 [Caenorhabditis briggsae] 5.0E-75
blast E89632 protein F13E6.1 [imported] - Caenorhabditis elegans 9.0E-55
Protein Domains
Database ID Description E-Value
scop a.4.5.Replication initiation protein All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Replication initiation protein 0.219999998807907
Pfam IPR007327 EMBL-EBI Tumor protein D52 2.5E-93
Sequence
Target Sequence 
>C. ELEGANS:189052_S_AT
aatcgtgctctcccaagcagaaaaggaccttttgcgcactgaattggataagaccgaaga
agaaatctcaacgctgaagcaagtcctatctgccagacaaaaacacgccgccgagctcaa
gcgcaagttgggacttactccattctcggaactctctcaggacatcaaccgcagcttgaa
aactgtcaccgataccgacgcgtgcactcattttattgaaataaatattcaaaaaaaaaa
gaaacaatcgatgtattatattaaacgactgtccaagaatattcaaacagtaccaatact
gactagtgaaaaaaaaagaattttgcatgcttttatagtattaaaaaaaaaaagttcgat
acttaaaagtttattactgtggcaacaataccaaaaaaccgctgaggtagccgccgccac
gtctgacacagttaaagaaaagtggaatgacatgagaaactcatcactgttcaaatcctt
cgagtcaaaacttggttctgccctcaacaacgctaagatggctgcttcaacatcgattga
tcatttggcgggagctgctcgtggtccaagtcaaaccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGTGCTCTCCCAAGCAGAAAAG 259 169 171 Antisense
AAAGGACCTTTTGCGCACTGAATTG 287 119 192 Antisense
GCTGAAGCAAGTCCTATCTGCCAGA 83 297 243 Antisense
ATCTGCCAGACAAAAACACGCCGCC 686 31 258 Antisense
CCGCCGAGCTCAAGCGCAAGTTGGG 538 261 278 Antisense
CAAGTTGGGACTTACTCCATTCTCG 88 181 294 Antisense
CGGAACTCTCTCAGGACATCAACCG 657 241 317 Antisense
ACTCATCACTGTTCAAATCCTTCGA 305 101 629 Antisense
GAGTCAAAACTTGGTTCTGCCCTCA 64 399 652 Antisense
TTGATCATTTGGCGGGAGCTGCTCG 310 705 707 Antisense
CTGCTCGTGGTCCAAGTCAAACCGG 515 237 725 Antisense
Sequence Source Affymetrix Proprietary Database