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[189049_s_at] peptidase

Description F56F10.1 /REP_DB=WormBase Gene ID /WP=CE11274 /TR=SW:P90893 /GB=AAB36854.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 76      6grp_total > 35      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1855
1 2 3 4 range
A 3016.5
(3)
P 		1927.5
(-0.8)
P 		1913
(-0.9)
P 		1311
(-3)
P 		1706
B 2661.3
(3)
P 		1934.3
(-0.1)
P 		2017.2
(0.3)
P 		1251.4
(-3)
P 		1410
C 2705.9
(3)
P 		1855.6
(-0.3)
P 		2015.2
(0.3)
P 		1161.5
(-3)
P 		1544
avr 2794.6
(3) 		1905.8
(-0.4) 		1981.8
(-0.1) 		1241.3
(-3) 		1553

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 673
1 2 3 4 5 6 range
A 1429.4
(3)
P 		1177.7
(0.7)
P 		1224.3
(1.1)
P 		935.9
(-1.5)
P 		767.8
(-3)
P 		929.9
(-1.5)
P 		662
B 1319.5
(1.7)
P 		1406.4
(2.6)
P 		1441
(3)
P 		1077.9
(-1)
P 		896.7
(-3)
P 		1127.9
(-0.5)
P 		544
C 1225.3
(0.7)
P 		1406.9
(3)
P 		1139.3
(-0.4)
P 		1143.8
(-0.3)
P 		929.1
(-3)
P 		1227.1
(0.7)
P 		478
avr 1324.7
(2.9) 		1330.3
(3) 		1268.2
(2.2) 		1052.5
(-0.6) 		864.5
(-3) 		1095
(-0) 		466
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 906
1 2 3 4 range
A 1098.3
(3)
P 		418.4
(-1.5)
P 		500.1
(-1)
P 		191.9
(-3)
P 		906
B 848.7
(3)
P 		477.7
(-0.8)
P 		467.4
(-0.9)
P 		266.7
(-3)
P 		582
C 895.7
(3)
P 		533.5
(-0.1)
P 		702.4
(1.3)
P 		195.9
(-3)
P 		700
avr 947.6
(3) 		476.5
(-0.9) 		556.6
(-0.2) 		218.2
(-3) 		729

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 263.5
(-1.8)
P 		418.8
(3)
P 		266.6
(-1.7)
P 		237.4
(-2.7)
P 		231.7
(-2.8)
P 		226.4
(-3)
P 		192
B 459.1
(2.7)
P 		468.1
(3)
P 		349.9
(-0.9)
P 		285.5
(-3)
P 		364.3
(-0.4)
P 		420.6
(1.4)
P 		183
C 454.2
(3)
P 		429.3
(2.3)
P 		290
(-1.4)
P 		230
(-3)
P 		300.6
(-1.1)
P 		410.8
(1.8)
P 		224
avr 392.3
(1.5) 		438.7
(3) 		302.2
(-1.4) 		251
(-3) 		298.9
(-1.5) 		352.6
(0.2) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189049_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18272
Sequence Type Exemplar sequence
Representative Public ID F56F10.1 NCBI
Target Description F56F10.1 /REP_DB=WormBase Gene ID /WP=CE11274 /TR=SW:P90893 /GB=AAB36854.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075769 NCBI Caenorhabditis elegans F56F10.1 (peptidase) mRNA, complete cds. 11/11 A 
GENEFINDER00000043712 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:872603:876898:1 9/11 None
SNAP00000043698 ENSEMBL cdna:SNAP chromosome:CEL140:X:872980:875867:1 11/11 None
F56F10.1.2 ENSEMBL cdna:known chromosome:CEL140:X:872515:875947:1 gene:F56F10.1 11/11 None
F56F10.1.1 ENSEMBL cdna:known chromosome:CEL140:X:872601:875947:1 gene:F56F10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:872303-875867(+) 100.0 100.0
Public Domain and Genome References
Gene Title peptidase
Ensembl F56F10.1
Entrez Gene 180436 Entrez gene
WormBase CE34034 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8236 serine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB36854 Hypothetical protein F56F10.1 [Caenorhabditis elegans] ref|NP_508170.2| F56F10.1 [Caenorhabditis elegans] sp|P90893|YM9I_CAEEL Putative serine protease F56F10.1 precursor 0.0
blast T16490 hypothetical protein F56F10.1 - Caenorhabditis elegans 0.0
blast CAE63608 Hypothetical protein CBG08099 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189049_S_AT
aactactatggaggcgctgacttttataatgctacgaatgtcgttcttccaaatggctct
ctcgacccatggcacgctttgggtacttatgggaccatcaaaagccaatctcttcttcca
taccttatcaacggaactgcgcattgtggagacatgtacccatcatatgatggagagccg
ggatctttgctagcggctcgtgcttttgttaaggaaaatgttcggcaatttattagatac
gatccaaatgtcgatggtccaggtggcagttcatctagcgcttcactgtttgttgtggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTACTATGGAGGCGCTGACTTTT 465 137 1453 Antisense
GAACTGCGCATTGTGGAGACATGTA 397 349 1586 Antisense
GGAGACATGTACCCATCATATGATG 520 519 1600 Antisense
TGGAGAGCCGGGATCTTTGCTAGCG 287 549 1623 Antisense
CTAGCGGCTCGTGCTTTTGTTAAGG 332 225 1642 Antisense
AATGTTCGGCAATTTATTAGATACG 559 161 1669 Antisense
GATACGATCCAAATGTCGATGGTCC 653 423 1688 Antisense
ATGTCGATGGTCCAGGTGGCAGTTC 26 49 1700 Antisense
GTCCAGGTGGCAGTTCATCTAGCGC 409 477 1709 Antisense
CATCTAGCGCTTCACTGTTTGTTGT 128 213 1724 Antisense
TAGCGCTTCACTGTTTGTTGTGGCT 485 651 1728 Antisense
Sequence Source Affymetrix Proprietary Database