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[189048_at] peptidase

Description F56F10.1 /REP_DB=WormBase Gene ID /WP=CE11274 /TR=SW:P90893 /GB=AAB36854.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 23      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 31      6grp_total > 12      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1471
1 2 3 4 range
A 1922.3
(3)
P 		1370.9
(0.6)
P 		1840.9
(2.6)
P 		561.9
(-3)
P 		1360
B 2033.1
(3)
P 		1550.3
(0.8)
P 		1837.9
(2.1)
P 		687.2
(-3)
P 		1346
C 1622.2
(2.5)
P 		1719.6
(3)
P 		1628.5
(2.5)
P 		618.3
(-3)
P 		1101
avr 1859.2
(3) 		1546.9
(1.5) 		1769.1
(2.6) 		622.5
(-3) 		1237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 544
1 2 3 4 5 6 range
A 1129.4
(2.4)
P 		1172.5
(3)
P 		848.6
(-1.4)
P 		834.8
(-1.6)
P 		832.8
(-1.6)
P 		729.3
(-3)
P 		443
B 926.6
(1.3)
P 		958
(1.8)
P 		1034.9
(3)
P 		841.1
(0)
P 		789.3
(-0.8)
P 		645
(-3)
P 		390
C 933.1
(0.5)
P 		1153
(3)
P 		915
(0.3)
P 		855
(-0.4)
P 		797.8
(-1.1)
P 		628.3
(-3)
P 		525
avr 996.4
(1.6) 		1094.5
(3) 		932.8
(0.7) 		843.6
(-0.5) 		806.6
(-1) 		667.5
(-3) 		427
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 618
1 2 3 4 range
A 699.9
(3)
P 		297.6
(-0.9)
P 		481.2
(0.9)
P 		82.3
(-3)
P 		618
B 648.3
(3)
P 		382.9
(-0.2)
P 		425.9
(0.3)
P 		146.5
(-3)
P 		502
C 537
(2.6)
P 		494.4
(2.1)
P 		567.6
(3)
P 		104.3
(-3)
P 		463
avr 628.4
(3) 		391.6
(0.3) 		491.6
(1.4) 		111
(-3) 		517

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 208.2
(-2.2)
P 		417
(3)
P 		184.8
(-2.8)
P 		211.7
(-2.1)
P 		251.3
(-1.2)
P 		177.6
(-3)
P 		239
B 322.4
(3)
P 		318.9
(2.8)
P 		251.3
(-1.3)
P 		222.8
(-3)
P 		320.7
(2.9)
P 		240.5
(-1.9)
P 		100
C 345.9
(2.8)
P 		351.8
(3)
P 		232.9
(-1)
P 		171.9
(-3)
P 		258.1
(-0.1)
P 		210.3
(-1.7)
P 		180
avr 292.2
(0.4) 		362.6
(3) 		223
(-2.2) 		202.1
(-3) 		276.7
(-0.2) 		209.5
(-2.7) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18272
Sequence Type Exemplar sequence
Representative Public ID F56F10.1 NCBI
Target Description F56F10.1 /REP_DB=WormBase Gene ID /WP=CE11274 /TR=SW:P90893 /GB=AAB36854.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075769 NCBI Caenorhabditis elegans F56F10.1 (peptidase) mRNA, complete cds. 11/11 A 
GENEFINDER00000043712 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:872603:876898:1 11/11 None
SNAP00000043698 ENSEMBL cdna:SNAP chromosome:CEL140:X:872980:875867:1 11/11 None
F56F10.1.2 ENSEMBL cdna:known chromosome:CEL140:X:872515:875947:1 gene:F56F10.1 11/11 None
F56F10.1.1 ENSEMBL cdna:known chromosome:CEL140:X:872601:875947:1 gene:F56F10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:872303-875867(+) 100.0 100.0
Public Domain and Genome References
Gene Title peptidase
Ensembl F56F10.1
Entrez Gene 180436 Entrez gene
WormBase CE34034 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8236 serine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB36854 Hypothetical protein F56F10.1 [Caenorhabditis elegans] ref|NP_508170.2| F56F10.1 [Caenorhabditis elegans] sp|P90893|YM9I_CAEEL Putative serine protease F56F10.1 precursor 0.0
blast T16490 hypothetical protein F56F10.1 - Caenorhabditis elegans 0.0
blast CAE63608 Hypothetical protein CBG08099 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189048_AT
tcaaccaaatggagcccgcaagcgcaaatctcactgtcatgccgaacagttattgggatg
tgatcagtcaagtgggaagcggagatttgaacgttttgggaccagatggagctgccgctc
gtggatggatgtggttgtgttgtaacgagattggattcctccagactacaaatcagggaa
ataatgtattcggaacaggagttccattgaacttattcatcgacatgtgcacagacatgt
ttggtgatagtatgaaaatgagtcaaatcatgggaggcaacaagaaatcgcaaaactact
atggaggcgctgacttttataatgctacgaatgtcgttcttccaaatggctctctcgacc
catggcacgctttgggtacttatgggaccatcaaaagccaatctcttcttccatacctta
tcaacggaactgcgcattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACCAAATGGAGCCCGCAAGCGC 394 631 1160 Antisense
ATGGAGCCCGCAAGCGCAAATCTCA 546 51 1168 Antisense
GCAAATCTCACTGTCATGCCGAACA 632 317 1183 Antisense
GGAGATTTGAACGTTTTGGGACCAG 668 515 1240 Antisense
TTTGGGACCAGATGGAGCTGCCGCT 518 651 1254 Antisense
TGCCGCTCGTGGATGGATGTGGTTG 557 583 1272 Antisense
GAGATTGGATTCCTCCAGACTACAA 383 397 1306 Antisense
GAACTTATTCATCGACATGTGCACA 620 349 1368 Antisense
GAAATCGCAAAACTACTATGGAGGC 659 361 1443 Antisense
ATGGCACGCTTTGGGTACTTATGGG 350 49 1521 Antisense
ACCTTATCAACGGAACTGCGCATTG 266 87 1574 Antisense
Sequence Source Affymetrix Proprietary Database