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[189045_at]

Description F34D10.6 /REP_DB=WormBase Gene ID /WP=CE00966 /TR=Q19995 /GB=CAA84316.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=7 ANK repeats
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 90      6grp_total > 49      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 353.9
(3)
P 		286.8
(1.1)
P 		140.7
(-3)
P 		273.8
(0.7)
P 		213
B 342.7
(2.5)
P 		184.6
(-2.3)
P 		161.1
(-3)
P 		359.3
(3)
P 		198
C 441.1
(3)
P 		218.5
(-1.9)
P 		166.1
(-3)
P 		277.1
(-0.6)
P 		275
avr 379.2
(3) 		230
(-1) 		156
(-3) 		303.4
(1) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 158.6
(0.1)
P 		180.6
(1.1)
P 		91
(-2.9)
P 		88.8
(-3)
P 		133.6
(-1)
P 		223.9
(3)
P 		135
B 182.6
(2.3)
P 		138
(-0)
P 		104.6
(-1.8)
P 		81.6
(-3)
P 		129
(-0.5)
P 		196.2
(3)
P 		115
C 178.9
(1.7)
P 		118.6
(-1.2)
P 		104.8
(-1.8)
P 		80.8
(-3)
P 		139.8
(-0.2)
P 		205.8
(3)
P 		125
avr 173.4
(1.3) 		145.7
(-0) 		100.1
(-2.2) 		83.7
(-3) 		134.1
(-0.6) 		208.6
(3) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 128.8
(3)
P 		62.3
(-1.3)
P 		36.8
(-3)
P 		40.1
(-2.8)
P 		92
B 109.3
(3)
P 		45.6
(-2.3)
P 		37.3
(-3)
P 		76.6
(0.3)
P 		72
C 146
(3)
P 		62.8
(-2)
P 		57.9
(-2.3)
P 		46.7
(-3)
P 		99
avr 128
(3) 		56.9
(-2.1) 		44
(-3) 		54.5
(-2.3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 29.2
(-1.7)
P 		64.2
(3)
P 		19.8
(-3)
P 		22.5
(-2.6)
P 		40.3
(-0.2)
P 		54.5
(1.7)
P 		44
B 63.5
(1.9)
P 		45.9
(-0.2)
P 		25.4
(-2.6)
P 		21.6
(-3)
P 		52.4
(0.6)
P 		73.2
(3)
P 		52
C 66.3
(2.7)
P 		36.2
(-0.7)
P 		26.7
(-1.8)
P 		16.2
(-3)
P 		45.2
(0.3)
P 		68.9
(3)
P 		53
avr 53
(1.3) 		48.8
(0.8) 		24
(-2.5) 		20.1
(-3) 		46
(0.4) 		65.5
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6192
Sequence Type Exemplar sequence
Representative Public ID F34D10.6 NCBI
Target Description F34D10.6 /REP_DB=WormBase Gene ID /WP=CE00966 /TR=Q19995 /GB=CAA84316.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=7 ANK repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171102(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171102 NCBI Caenorhabditis elegans F34D10.7 (F34D10.7) mRNA, complete cds. 11/11 None
GENEFINDER00000033693 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3747576:3759328:-1 11/11 None
SNAP00000033689 ENSEMBL cdna:SNAP chromosome:CEL140:III:3748015:3752390:-1 9/11 None
F34D10.7.1 ENSEMBL cdna:known chromosome:CEL140:III:3747538:3752611:-1 gene:F34D10.7 11/11 None
F34D10.7.2 ENSEMBL cdna:known chromosome:CEL140:III:3747576:3752403:-1 gene:F34D10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3747575-3758188(-) 96.32 100.0
Public Domain and Genome References
Gene Title
Ensembl F34D10.7
Entrez Gene 3565486 Entrez gene
SwissProt Q8MQ63 EMBL-EBI
WormBase CE37011 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640011_AT dm
DROSGENOME1:147714_AT dm
Protein Similarities
Method ID Description E-Value
blast CAD44130 Hypothetical protein F34D10.7 [Caenorhabditis elegans] ref|NP_741115.2| F34D10.7 [Caenorhabditis elegans] 0.0
blast CAE64492 Hypothetical protein CBG09217 [Caenorhabditis briggsae] 0.0
blast CAA84316 Hypothetical protein F34D10.6 [Caenorhabditis elegans] ref|NP_497760.3| F34D10.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.049
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-4
Pfam IPR002110 EMBL-EBI Ankyrin 6.9E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.72
Pfam IPR002110 EMBL-EBI Ankyrin 0.077
Pfam IPR002110 EMBL-EBI Ankyrin 17.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.8E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.0060
Pfam IPR002110 EMBL-EBI Ankyrin 9.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.065
Pfam IPR002110 EMBL-EBI Ankyrin 5.3E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.015
Pfam IPR007858 EMBL-EBI Dpy-30 1.6E-9
Pfam IPR002110 EMBL-EBI Ankyrin 17.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.8E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.0060
Pfam IPR002110 EMBL-EBI Ankyrin 9.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.065
Pfam IPR002110 EMBL-EBI Ankyrin 5.3E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.015
Pfam IPR002110 EMBL-EBI Ankyrin 17.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.8E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.0060
Pfam IPR002110 EMBL-EBI Ankyrin 9.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.065
Pfam IPR002110 EMBL-EBI Ankyrin 5.3E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.015
Pfam IPR007858 EMBL-EBI Dpy-30 1.6E-9
Sequence
Target Sequence 
>C. ELEGANS:189045_AT
tggatgtacacctttgcattctgcagttgttcatgagcacactgaaattgtccggtatat
tgcaggacactataactctgttttaaatgctcctgattataataagcgaactgcaatgca
ttacgctgccgcggcaagagatggaggtcattacctgaaaattcttggaaaagctggagc
cgatccgatggctgttgataacgaaggaagaacacctgattattaccgaaggaatgcagt
tattgatttgaaacttatcaaggatcgggatgaagattttgagactataaatgaggagta
tttagaggatgggccattgattgattctccagctacacctgattcaggaagtgaagggtc
attcattgatagtgcacgtatgttggatgatgaggatgaaagtattgaaaggcatcggtt
tgagaaggcgttcagagggaagattgatttgccaacgtcggagaatggagtatatctcgc
aaggacggtggcgcctgttttgactaaagcgctggcagaggttctacttcgccgtcctgc
cgaccctattggatttattgccgagtggctctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGATGTACACCTTTGCATTCTGCA 105 551 3285 Antisense
AACTCTGTTTTAAATGCTCCTGATT 424 141 3358 Antisense
GAACTGCAATGCATTACGCTGCCGC 22 349 3392 Antisense
GCTGCCGCGGCAAGAGATGGAGGTC 18 299 3409 Antisense
AGCTGGAGCCGATCCGATGGCTGTT 342 81 3456 Antisense
GGCCATTGATTGATTCTCCAGCTAC 579 543 3596 Antisense
TTCTCCAGCTACACCTGATTCAGGA 1 695 3609 Antisense
ATATCTCGCAAGGACGGTGGCGCCT 639 19 3756 Antisense
GGTGGCGCCTGTTTTGACTAAAGCG 104 499 3771 Antisense
TCCTGCCGACCCTATTGGATTTATT 101 593 3819 Antisense
GGATTTATTGCCGAGTGGCTCTCAA 71 509 3835 Antisense
Sequence Source Affymetrix Proprietary Database