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[189044_s_at] casein kinase

Description T05A7.6 /REP_DB=WormBase Gene ID /WP=CE04892 /TR=Q22203 /GB=AAA81115.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=casein kinase
Cluster 6grp_total > 88      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 4.8
(-2.3)
A 		24.3
(3)
A 		23
(2.6)
A 		2.1
(-3)
A 		22
B 4.1
(1.1)
A 		4
(0.9)
A 		5.3
(3)
A 		1.5
(-3)
A 		4
C 9.8
(-2.1)
A 		5.7
(-2.6)
A 		2.1
(-3)
A 		51.8
(3)
A 		50
avr 6.2
(-3) 		11.3
(-0.5) 		10.1
(-1.1) 		18.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 5.9
(-2.7)
A 		1.6
(-3)
A 		26.5
(-1.2)
A 		1.4
(-3)
A 		45.3
(0.2)
A 		84.3
(3)
P 		83
B 5.9
(-2.7)
A 		1.6
(-3)
A 		1.9
(-3)
A 		6.9
(-2.6)
A 		38.1
(-0.1)
M 		78.3
(3)
P 		77
C 13
(-2.3)
A 		8.7
(-2.7)
A 		19.9
(-1.5)
A 		6.4
(-3)
A 		35.7
(0.2)
A 		61.3
(3)
P 		55
avr 8.3
(-2.6) 		4
(-3) 		16.1
(-2) 		4.9
(-2.9) 		39.7
(0) 		74.6
(3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.8
(-1.4)
A 		5.3
(2.3)
A 		6
(3)
A 		0.3
(-3)
A 		6
B 1.3
(3)
A 		1
(1.2)
A 		1.2
(2.4)
A 		0.3
(-3)
A 		1
C 3.2
(-1.1)
A 		1.6
(-2.3)
A 		0.7
(-3)
A 		8.7
(3)
A 		8
avr 2.1
(-3) 		2.6
(0) 		2.6
(0) 		3.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		0.6
(-2.9)
A 		5.8
(-1.4)
A 		0.3
(-3)
A 		13.7
(1)
A 		20.5
(3)
P 		20
B 2
(-2.7)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1.8
(-2.7)
A 		15.5
(0.1)
M 		29.2
(3)
P 		29
C 4.8
(-1.9)
A 		2.7
(-2.6)
A 		5.1
(-1.8)
A 		1.3
(-3)
A 		11.6
(0.2)
A 		20.5
(3)
P 		19
avr 2.6
(-2.6) 		1.3
(-2.9) 		3.8
(-2.3) 		1.1
(-3) 		13.6
(0.4) 		23.4
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189044_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4982
Sequence Type Exemplar sequence
Representative Public ID T05A7.6 NCBI
Target Description T05A7.6 /REP_DB=WormBase Gene ID /WP=CE04892 /TR=Q22203 /GB=AAA81115.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=casein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062423 NCBI Caenorhabditis elegans T05A7.6 (T05A7.6) mRNA, complete cds. 11/11 A 
SNAP00000043915 ENSEMBL cdna:SNAP chromosome:CEL140:II:4668705:4671371:-1 11/11 None
GENEFINDER00000043931 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4668705:4672337:-1 11/11 None
T05A7.6 ENSEMBL cdna:known chromosome:CEL140:II:4668689:4671761:-1 gene:T05A7.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4668703-4671725(-) 100.0 100.0
Public Domain and Genome References
Gene Title casein kinase
Ensembl T05A7.6
Entrez Gene 173804 Entrez gene
SwissProt Q22203 EMBL-EBI
WormBase CE04892 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494824 T05A7.6 [Caenorhabditis elegans] gb|AAA81115.1| Hypothetical protein T05A7.6 [Caenorhabditis elegans] 0.0
blast AAK31524 Hypothetical protein F59A6.4 [Caenorhabditis elegans] ref|NP_494922.1| F59A6.4 [Caenorhabditis elegans] 0.0
blast CAE67848 Hypothetical protein CBG13435 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 6.8E-6
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-4
Pfam IPR000719 EMBL-EBI Protein kinase 6.8E-6
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-4
Pfam IPR000719 EMBL-EBI Protein kinase 6.8E-6
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-4
Sequence
Target Sequence 
>C. ELEGANS:189044_S_AT
ttcaacgttgccatccaaactgtcactgctctccgggatcttcattcacttggctatctc
catcgagacatcaaaccagcaaactatgcagttggtcttgatgaacgtgaggatacagtc
tacatgctcgactttggaattgccaaactttacgttgatgagaatggagttcacaagata
aaaagaaagaaggtgaagttcctgggaacgctgagatatgcttgtcgggcatgtatgatg
cagcaggaacagggaaggaaggatgacttggaaacttggatctacttggtatttgatttg
atggatgaagcacatggaatgccttggagagctttgtgcgatcccagggagattttgaag
tcgaagaacacattctttgctacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAACGTTGCCATCCAAACTGTCA 88 685 1660 Antisense
GGATCTTCATTCACTTGGCTATCTC 124 513 1695 Antisense
TTCACTTGGCTATCTCCATCGAGAC 447 687 1704 Antisense
TATGCAGTTGGTCTTGATGAACGTG 682 655 1744 Antisense
GAACGTGAGGATACAGTCTACATGC 625 347 1762 Antisense
TACATGCTCGACTTTGGAATTGCCA 112 645 1780 Antisense
GGAATTGCCAAACTTTACGTTGATG 685 533 1795 Antisense
ATGACTTGGAAACTTGGATCTACTT 92 45 1922 Antisense
GCCTTGGAGAGCTTTGTGCGATCCC 664 281 1980 Antisense
AGCTTTGTGCGATCCCAGGGAGATT 342 79 1989 Antisense
GTCGAAGAACACATTCTTTGCTACC 250 473 2019 Antisense
Sequence Source Affymetrix Proprietary Database