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[189043_s_at] transketolase

Description F01G10.1 /REP_DB=WormBase Gene ID /WP=CE09163 /TR=O17759 /GB=CAB02889.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=transketolase
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 18      6grp_total > 53      4grp_total > 41      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10373
1 2 3 4 range
A 12577.3
(-3)
P 		22830.4
(3)
P 		22883.5
(3)
P 		20616.5
(1.7)
P 		10306
B 13850.3
(-3)
P 		21023.7
(2.2)
P 		22058.4
(3)
P 		18548.2
(0.4)
P 		8208
C 12511
(-3)
P 		19456.2
(3)
P 		18771.7
(2.4)
P 		17778.8
(1.6)
P 		6945
avr 12979.5
(-3) 		21103.4
(2.9) 		21237.9
(3) 		18981.2
(1.4) 		8258

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13587
1 2 3 4 5 6 range
A 17405.5
(-0)
P 		18832.6
(1)
P 		21557.2
(3)
P 		16360.4
(-0.8)
P 		13335.3
(-3)
P 		16930.8
(-0.4)
P 		8222
B 14387.7
(-1.8)
P 		17155.5
(-0.3)
P 		23584.1
(3)
P 		16725.8
(-0.5)
P 		11980.5
(-3)
P 		13508.2
(-2.2)
P 		11604
C 11527.7
(-3)
P 		16759.4
(-0.7)
P 		25114.8
(3)
P 		15809.1
(-1.1)
P 		13437.7
(-2.2)
P 		14450.8
(-1.7)
P 		13587
avr 14440.3
(-2.1) 		17582.5
(-0.3) 		23418.7
(3) 		16298.4
(-1.1) 		12917.8
(-3) 		14963.3
(-1.8) 		10501
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3545
1 2 3 4 range
A 4579.4
(0.2)
P 		4955.9
(0.9)
P 		5982.2
(3)
P 		3017.8
(-3)
P 		2964
B 4416.7
(-0.8)
P 		5192.4
(3)
P 		5111.4
(2.6)
P 		3952.6
(-3)
P 		1240
C 4141.5
(-1.1)
P 		5593.8
(1.4)
P 		6542.5
(3)
P 		2997.8
(-3)
P 		3545
avr 4379.2
(-0.5) 		5247.4
(1.5) 		5878.7
(3) 		3322.7
(-3) 		2556

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3519
1 2 3 4 5 6 range
A 3208.6
(-3)
P 		6697.8
(3)
P 		4694.7
(-0.4)
P 		4149.4
(-1.4)
P 		4024
(-1.6)
P 		4122.1
(-1.4)
P 		3489
B 5006.2
(-0.3)
P 		5710.4
(2.9)
P 		5726.9
(3)
P 		4430.1
(-3)
P 		4867.5
(-1)
P 		5037.1
(-0.2)
P 		1297
C 4272.8
(-1)
P 		5113.8
(0.6)
P 		6392.2
(3)
P 		3179.2
(-3)
P 		4348.2
(-0.8)
P 		4837.5
(0.1)
P 		3213
avr 4162.5
(-2.2) 		5840.7
(3) 		5604.6
(2.3) 		3919.6
(-3) 		4413.2
(-1.5) 		4665.6
(-0.7) 		1921
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189043_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8938
Sequence Type Exemplar sequence
Representative Public ID F01G10.1 NCBI
Target Description F01G10.1 /REP_DB=WormBase Gene ID /WP=CE09163 /TR=O17759 /GB=CAB02889.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=transketolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069477 NCBI Caenorhabditis elegans F01G10.1 (transketolase) mRNA, complete cds. 11/11 A 
SNAP00000013161 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10243587:10245624:1 11/11 None
GENEFINDER00000013175 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10243587:10245624:1 11/11 None
F01G10.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:10243562:10245723:1 gene:F01G10.1 11/11 A 
F01G10.1.4 ENSEMBL cdna:known chromosome:CEL140:IV:10243576:10245710:1 gene:F01G10.1 11/11 None
F01G10.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:10243581:10245710:1 gene:F01G10.1 11/11 None
F01G10.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:10243583:10245723:1 gene:F01G10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10243592-10245630(+) 100.0 100.0
Public Domain and Genome References
Gene Title transketolase
Ensembl F01G10.1
Entrez Gene 177906 Entrez gene
SwissProt O17759 EMBL-EBI
WormBase CE09163 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1627910_S_AT dm
DROSGENOME1:153373_AT dm
HG-U133_PLUS_2:223829_AT transketolase-like 2 hs
HG-U133B:223829_AT transketolase-like 2 hs
U133_X3P:G12053070_3P_AT transketolase-like 2 hs
HG-U95C:55429_AT transketolase-like 2 hs
HG-U95E:76626_AT transketolase-like 2 hs
MOE430B:1430434_AT transketolase-like 2 mm
MOUSE430_2:1430434_AT transketolase-like 2 mm
Protein Similarities
Method ID Description E-Value
blast CAB02889 Hypothetical protein F01G10.1 [Caenorhabditis elegans] ref|NP_501878.1| F01G10.1 [Caenorhabditis elegans] 0.0
blast CAE59901 Hypothetical protein CBG03385 [Caenorhabditis briggsae] 0.0
blast AAP59458 transketolase [Danio rerio] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005476 EMBL-EBI Transketolase, C terminal 1.8E-34
Pfam IPR005475 EMBL-EBI Transketolase, central region 7.5E-54
Pfam IPR005474 EMBL-EBI Transketolase, N terminal 9.0E-91
Sequence
Target Sequence 
>C. ELEGANS:189043_S_AT
aaggaattcacgccactgttatcgatccattcaccatcaagccactggatggaaagacca
tcgccgagcacgctctgaaagttggaggacgagttgttactaccgaagaccactacgcag
ctggaggaataggagaagctgtttccgctgctctcgctgattatccaacgattcgtgtca
gatcattgaatgtcaaggaagttccacgctccggaccaccagatgctctcgtggacatgt
acggaatctctgctcgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAATTCACGCCACTGTTATCGA 313 161 1580 Antisense
GAATTCACGCCACTGTTATCGATCC 209 325 1583 Antisense
GTTATCGATCCATTCACCATCAAGC 627 445 1597 Antisense
ATCCATTCACCATCAAGCCACTGGA 51 41 1604 Antisense
TCAAGCCACTGGATGGAAAGACCAT 171 629 1616 Antisense
GATGGAAAGACCATCGCCGAGCACG 496 407 1627 Antisense
CATCGCCGAGCACGCTCTGAAAGTT 358 211 1638 Antisense
GCACGCTCTGAAAGTTGGAGGACGA 75 313 1647 Antisense
TACTACCGAAGACCACTACGCAGCT 389 643 1677 Antisense
GACCACTACGCAGCTGGAGGAATAG 131 383 1687 Antisense
ACATGTACGGAATCTCTGCTCGTCA 242 107 1814 Antisense
Sequence Source Affymetrix Proprietary Database