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[189042_at] transketolase

Description F01G10.1 /REP_DB=WormBase Gene ID /WP=CE09163 /TR=O17759 /GB=CAB02889.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=transketolase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 17      6grp_total > 52      4grp_total > 41      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6603
1 2 3 4 range
A 8394.2
(-3)
P 		12317
(1.3)
P 		13909.1
(3)
P 		10173.5
(-1.1)
P 		5515
B 8187.7
(-3)
P 		10340
(1.4)
P 		11098.6
(3)
P 		9710.2
(0.1)
P 		2911
C 7305.9
(-3)
P 		9584.7
(1.7)
P 		10196.1
(3)
P 		9074.4
(0.7)
P 		2890
avr 7962.6
(-3) 		10747.2
(1.4) 		11734.6
(3) 		9652.7
(-0.3) 		3772

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9843
1 2 3 4 5 6 range
A 9010.7
(-2.4)
P 		12112.1
(2.8)
P 		12260.9
(3)
P 		10359.4
(-0.2)
P 		8687.5
(-2.9)
P 		8639.9
(-3)
P 		3621
B 9264.4
(-0.9)
P 		10742
(0.9)
P 		12534.5
(3)
P 		9653.7
(-0.4)
P 		7522
(-3)
P 		7505.5
(-3)
P 		5029
C 9005.6
(-1.6)
P 		9657.9
(-1.2)
P 		16580.6
(3)
P 		8351
(-2)
P 		9339.1
(-1.4)
P 		6737.7
(-3)
P 		9843
avr 9093.6
(-1.6) 		10837.3
(0.1) 		13792
(3) 		9454.7
(-1.2) 		8516.2
(-2.1) 		7627.7
(-3) 		6164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2147
1 2 3 4 range
A 3056.3
(1.4)
P 		2673.7
(0.3)
P 		3636.1
(3)
P 		1489.2
(-3)
P 		2147
B 2611
(3)
P 		2553.7
(2.4)
P 		2571.8
(2.6)
P 		2069.2
(-3)
P 		542
C 2418.5
(-0.4)
P 		2755.6
(0.6)
P 		3553.7
(3)
P 		1530.1
(-3)
P 		2024
avr 2695.3
(0.8) 		2661
(0.7) 		3253.9
(3) 		1696.2
(-3) 		1558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2647
1 2 3 4 5 6 range
A 1661
(-3)
P 		4307.7
(3)
P 		2670.2
(-0.7)
P 		2627.4
(-0.8)
P 		2621.5
(-0.8)
P 		2103.5
(-2)
P 		2647
B 3223.6
(0.9)
P 		3575.5
(3)
P 		3043.7
(-0.1)
P 		2556.9
(-3)
P 		3056.1
(-0.1)
P 		2798.8
(-1.6)
P 		1019
C 3338
(0.9)
P 		2946.9
(-0)
P 		4220
(3)
P 		1679.4
(-3)
P 		3022
(0.2)
P 		2255.5
(-1.6)
P 		2541
avr 2740.9
(-0.9) 		3610
(3) 		3311.3
(1.6) 		2287.9
(-3) 		2899.9
(-0.2) 		2385.9
(-2.6) 		1322
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189042_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8938
Sequence Type Exemplar sequence
Representative Public ID F01G10.1 NCBI
Target Description F01G10.1 /REP_DB=WormBase Gene ID /WP=CE09163 /TR=O17759 /GB=CAB02889.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=transketolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069477 NCBI Caenorhabditis elegans F01G10.1 (transketolase) mRNA, complete cds. 11/11 A 
SNAP00000013161 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10243587:10245624:1 11/11 None
GENEFINDER00000013175 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10243587:10245624:1 11/11 None
F01G10.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:10243562:10245723:1 gene:F01G10.1 11/11 A 
F01G10.1.4 ENSEMBL cdna:known chromosome:CEL140:IV:10243576:10245710:1 gene:F01G10.1 11/11 None
F01G10.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:10243581:10245710:1 gene:F01G10.1 11/11 None
F01G10.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:10243583:10245723:1 gene:F01G10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10243592-10245630(+) 100.0 100.0
Public Domain and Genome References
Gene Title transketolase
Ensembl F01G10.1
Entrez Gene 177906 Entrez gene
SwissProt O17759 EMBL-EBI
WormBase CE09163 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1627910_S_AT dm
DROSGENOME1:153373_AT dm
HG-U133_PLUS_2:223829_AT transketolase-like 2 hs
HG-U133B:223829_AT transketolase-like 2 hs
U133_X3P:G12053070_3P_AT transketolase-like 2 hs
HG-U95C:55429_AT transketolase-like 2 hs
HG-U95E:76626_AT transketolase-like 2 hs
MOE430B:1430434_AT transketolase-like 2 mm
MOUSE430_2:1430434_AT transketolase-like 2 mm
Protein Similarities
Method ID Description E-Value
blast CAB02889 Hypothetical protein F01G10.1 [Caenorhabditis elegans] ref|NP_501878.1| F01G10.1 [Caenorhabditis elegans] 0.0
blast CAE59901 Hypothetical protein CBG03385 [Caenorhabditis briggsae] 0.0
blast AAP59458 transketolase [Danio rerio] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005476 EMBL-EBI Transketolase, C terminal 1.8E-34
Pfam IPR005475 EMBL-EBI Transketolase, central region 7.5E-54
Pfam IPR005474 EMBL-EBI Transketolase, N terminal 9.0E-91
Sequence
Target Sequence 
>C. ELEGANS:189042_AT
gttggatctcacgtcggagtctcaattggagaagatggaccaagtcaaatggctctcgaa
gatcttgcaattttccgtactatcccaggagcaactgttttctacccaaccgacgccgtg
tctgctgaaagagcaacagagttggctgccaacacaaaaggagttgttttcattcgtacc
ggccgccccgcacttccagttctctacgacaatgaagagccattccacattggacaagcc
aaggttgtgaagcagtcagcccaagataaaattgttcttgtcggatcgggagtcactttg
tacgagtcattgaaggccgctgaggagttggagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGATCTCACGTCGGAGTCTCAA 73 437 1243 Antisense
GTCAAATGGCTCTCGAAGATCTTGC 451 463 1286 Antisense
AAGATCTTGCAATTTTCCGTACTAT 427 155 1301 Antisense
TTTTCCGTACTATCCCAGGAGCAAC 108 673 1313 Antisense
CCAGGAGCAACTGTTTTCTACCCAA 560 269 1327 Antisense
CGACGCCGTGTCTGCTGAAAGAGCA 504 249 1353 Antisense
CACTTCCAGTTCTCTACGACAATGA 230 197 1433 Antisense
GAGCCATTCCACATTGGACAAGCCA 292 385 1459 Antisense
GGTTGTGAAGCAGTCAGCCCAAGAT 3 509 1485 Antisense
GTCGGATCGGGAGTCACTTTGTACG 353 471 1522 Antisense
TGAAGGCCGCTGAGGAGTTGGAGAA 595 571 1553 Antisense
Sequence Source Affymetrix Proprietary Database