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[189040_at] Calmodulin

Description B0563.7 /REP_DB=WormBase Gene ID /WP=CE02445 /TR=SW:Q11083 /GB=AAA68320.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Calmodulin
Cluster 6grp_total > 86      4grp_total > 03      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1067
1 2 3 4 range
A 109.3
(-2.6)
A 		44.3
(-3)
A 		44.2
(-3)
A 		931.2
(3)
P 		887
B 82.6
(-2.6)
A 		64
(-2.7)
A 		9
(-3)
A 		1076.3
(3)
P 		1067
C 130.1
(-2.3)
A 		24.8
(-3)
A 		66.4
(-2.7)
A 		966.8
(3)
P 		942
avr 107.3
(-2.6) 		44.4
(-3) 		39.9
(-3) 		991.4
(3) 		952

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 46.4
(-3)
A 		73.6
(1.2)
A 		68.5
(0.4)
A 		78.1
(1.9)
A 		62.9
(-0.4)
A 		84.9
(3)
A 		39
B 57.2
(-3)
A 		70.8
(-2)
A 		61.7
(-2.7)
A 		95.5
(-0.1)
A 		113.6
(1.3)
A 		136.5
(3)
P 		79
C 71.8
(-3)
A 		80
(-2.3)
A 		79.8
(-2.4)
A 		79.6
(-2.4)
A 		85.8
(-1.9)
A 		147
(3)
P 		75
avr 58.5
(-3) 		74.8
(-1.5) 		70
(-1.9) 		84.4
(-0.6) 		87.4
(-0.3) 		122.8
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 39.8
(-1.6)
A 		9.6
(-3)
A 		11.6
(-2.9)
A 		136.3
(3)
P 		127
B 26.3
(-2.4)
A 		15.8
(-2.6)
A 		2.1
(-3)
A 		229.4
(3)
P 		227
C 43.1
(-1.6)
A 		7.1
(-3)
A 		23.2
(-2.4)
A 		163
(3)
P 		156
avr 36.4
(-2.1) 		10.8
(-3) 		12.3
(-2.9) 		176.2
(3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 8.6
(-3)
A 		26.2
(3)
A 		14.9
(-0.9)
A 		19.8
(0.8)
A 		19
(0.5)
A 		20.7
(1.1)
A 		18
B 19.9
(-2.2)
A 		23.6
(-1.6)
A 		15
(-3)
A 		25.3
(-1.3)
A 		46.1
(2.2)
A 		50.9
(3)
P 		36
C 26.6
(-1.1)
A 		24.4
(-1.5)
A 		20.3
(-2.2)
A 		16
(-3)
A 		27.8
(-0.9)
A 		49.2
(3)
P 		33
avr 18.4
(-2.6) 		24.7
(-1) 		16.7
(-3) 		20.4
(-2.1) 		31
(0.6) 		40.3
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189040_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16821
Sequence Type Exemplar sequence
Representative Public ID B0563.7 NCBI
Target Description B0563.7 /REP_DB=WormBase Gene ID /WP=CE02445 /TR=SW:Q11083 /GB=AAA68320.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Calmodulin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077143(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077143 NCBI Caenorhabditis elegans B0563.7 (Calmodulin) mRNA, complete cds. 11/11 None
SNAP00000037332 ENSEMBL cdna:SNAP chromosome:CEL140:X:9152426:9154117:-1 11/11 None
GENEFINDER00000037340 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9152426:9155397:-1 11/11 None
B0563.7 ENSEMBL cdna:known chromosome:CEL140:X:9152426:9154117:-1 gene:B0563.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9152424-9154116(-) 99.86 100.0
Public Domain and Genome References
Gene Title Calmodulin
Ensembl B0563.7
Entrez Gene 182041 Entrez gene
SwissProt Q11083 EMBL-EBI
WormBase CE02445 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68320 Hypothetical protein B0563.7 [Caenorhabditis elegans] ref|NP_509544.1| B0563.7 [Caenorhabditis elegans] sp|Q11083|YT67_CAEEL Hypothetical calcium-binding protein B0563.7 in chromosome X 1.0E-129
blast AAA68320 Hypothetical protein B0563.7 [Caenorhabditis elegans] ref|NP_509544.1| B0563.7 [Caenorhabditis elegans] sp|Q11083|YT67_CAEEL Hypothetical calcium-binding protein B0563.7 in chromosome X 1.0E-124
blast CAE57274 Hypothetical protein CBG00175 [Caenorhabditis briggsae] 1.0E-121
blast CAE57274 Hypothetical protein CBG00175 [Caenorhabditis briggsae] 1.0E-116
blast CAB02878 Hypothetical protein E02A10.3 [Caenorhabditis elegans] ref|NP_506147.1| E02A10.3 [Caenorhabditis elegans] 1.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 9.4E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 7.6E-10
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.5E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0066
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.6E-7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.5E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0066
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 9.4E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 7.6E-10
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.5E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0066
Sequence
Target Sequence 
>C. ELEGANS:189040_AT
tcacgtggaactattcactcgcaacagagtcaaccggaggatattcaaatgaagtacaca
agaaaagaactcaaagaataccgtcagctgttcaacatgtttgacactgacggttctgga
gcaattggtaacgaagagttaaagcaggcaatgataagcattggacttcatgcaaacaaa
gctgaaattgacaacgtcatcaaagaggtggatgctgatggcaacggagaaattgatttt
gaagaattctgcgcgtgtatgaaaaaatcccaaaacatcgtgaagtcgaccaacgaagag
cttatcagagaatgtttcgagatattcgatcaagataggaatgggatcatcacagaaaat
gagtttaagtatattgcaaaagaatttggtgactttgacgatgagcttgccgaaaaagtt
tttcgcgaacttgacgtttctgccaacggtcatttgtctgcagatcagttcgcaactatc
gttgaagactacttgctaaacgaccccaaacatgacattgacactggtgattctgatgtg
gaaagatacgacgaccggcatgacgaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACGTGGAACTATTCACTCGCAAC 71 627 91 Antisense
CACTCGCAACAGAGTCAACCGGAGG 388 197 106 Antisense
AGAATACCGTCAGCTGTTCAACATG 710 75 165 Antisense
ACATGTTTGACACTGACGGTTCTGG 684 105 185 Antisense
GTGACTTTGACGATGAGCTTGCCGA 567 481 479 Antisense
TTCGCGAACTTGACGTTTCTGCCAA 175 697 512 Antisense
TTCTGCCAACGGTCATTTGTCTGCA 59 693 528 Antisense
TTGTCTGCAGATCAGTTCGCAACTA 624 705 544 Antisense
TGAAGACTACTTGCTAAACGACCCC 508 569 573 Antisense
ACGACCCCAAACATGACATTGACAC 223 93 590 Antisense
ATACGACGACCGGCATGACGACCGA 299 23 636 Antisense
Sequence Source Affymetrix Proprietary Database