[Home] | [Total List]

[189038_at] 7TM chemoreceptor, srh family

Description T27A1.7 /REP_DB=WormBase Gene ID /WP=CE21210 /TR=Q9TXQ3 /GB=AAF02174.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 17      4grp_total > 02      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 6.8
(-3)
A 		8.8
(-2.8)
A 		29.9
(-0.6)
A 		64.9
(3)
A 		58
B 5.1
(-3)
A 		28.7
(-1)
A 		10.3
(-2.6)
A 		77.6
(3)
A 		73
C 39.3
(0.4)
A 		9.2
(-2.5)
A 		4.2
(-3)
A 		65.9
(3)
A 		62
avr 17.1
(-2.7) 		15.6
(-2.9) 		14.8
(-3) 		69.5
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 85.3
(3)
A 		9.4
(-2.7)
A 		7.9
(-2.8)
A 		5.6
(-3)
A 		7.5
(-2.9)
A 		12.2
(-2.5)
A 		80
B 10.3
(-1.8)
A 		34
(3)
A 		33.8
(3)
A 		13.5
(-1.2)
A 		4.5
(-3)
A 		7.8
(-2.3)
A 		30
C 3.1
(-3)
A 		10.8
(-1.1)
A 		7.5
(-1.9)
A 		5.7
(-2.4)
A 		7.6
(-1.9)
A 		27.4
(3)
A 		24
avr 32.9
(3) 		18.1
(-0.4) 		16.4
(-0.8) 		8.3
(-2.6) 		6.5
(-3) 		15.8
(-0.9) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.5
(-2.5)
A 		1.9
(-3)
A 		7.8
(1.7)
A 		9.5
(3)
A 		8
B 1.6
(-3)
A 		7.1
(-0.8)
A 		2.4
(-2.7)
A 		16.5
(3)
A 		15
C 13
(3)
A 		2.6
(-2.4)
A 		1.5
(-3)
A 		11.1
(2)
A 		12
avr 5.7
(-1.7) 		3.9
(-3) 		3.9
(-3) 		12.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 15.7
(3)
A 		3.3
(-2.2)
A 		1.7
(-2.9)
A 		1.4
(-3)
A 		2.3
(-2.6)
A 		3
(-2.3)
A 		14
B 3.6
(-1.9)
A 		11.3
(3)
A 		8.2
(1)
A 		3.6
(-1.9)
A 		1.8
(-3)
A 		2.9
(-2.3)
A 		10
C 1.2
(-3)
A 		3.3
(-1.4)
A 		1.9
(-2.5)
A 		1.2
(-3)
A 		2.5
(-2)
A 		9.2
(3)
A 		8
avr 6.8
(3) 		6
(2) 		3.9
(-0.7) 		2.1
(-3) 		2.2
(-2.9) 		5
(0.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4802
Sequence Type Exemplar sequence
Representative Public ID T27A1.7 NCBI
Target Description T27A1.7 /REP_DB=WormBase Gene ID /WP=CE21210 /TR=Q9TXQ3 /GB=AAF02174.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061348 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-105) (srh-105) mRNA, complete cds. 11/11 None
SNAP00000021274 ENSEMBL cdna:SNAP chromosome:CEL140:II:508244:509325:-1 11/11 None
GENEFINDER00000021282 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:508244:509325:-1 11/11 None
T27A1.7 ENSEMBL cdna:known chromosome:CEL140:II:508244:509325:-1 gene:T27A1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:508243-509361(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-105
Ensembl T27A1.7
Entrez Gene 188964 Entrez gene
SwissProt Q9TXQ3 EMBL-EBI
WormBase CE38110 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_493749 Serpentine Receptor, class H family member (srh-105) [Caenorhabditis elegans] gb|AAF02174.2| Serpentine receptor, class h protein 308 [Caenorhabditis elegans] 0.0
blast B88023 protein T27A1.1 [imported] - Caenorhabditis elegans 1.0E-164
blast CAA16505 Hypothetical protein F08E10.6 [Caenorhabditis elegans] ref|NP_507428.1| Serpentine Receptor, class H family member (srh-111) [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493749.2 7 31-53,66-88,108-130,151-173,212-234,255-277,292-314
T27A1.7 7 31-53,66-88,108-130,151-173,212-234,255-277,292-314
SNAP00000021274 7 31-53,66-88,108-130,151-173,212-234,255-277,292-314
GENEFINDER00000021282 7 31-53,66-88,108-130,151-173,212-234,255-277,292-314
Sequence
Target Sequence 
>C. ELEGANS:189038_AT
gatcaactcgactcctttattatacatttttgcttattccctactatgctgcatttattg
tcatagtcctagttggggaaagcagcaattctgcaaagctgaaaaccttaagtcattatc
cgtgcccgacacgagagttcttcatacttccggtgtttatattactggtcaatggtggat
ctgaaagcctctatatacttatgactgctgtaatggcactaattgcaactgttaacattc
ttattcacgtgatttgtctggtttactacctttacgtagtcccacctagaacactttcga
aagaaactcgacagaatcaaagggtattcttggtggcggtggttttacaaacctcagtcc
cgctgatgcttataattgttcctggtatggcggtagtccttccattgttggctggatatt
atcgtcaagaatggataaatctggcagtgaacgtcatggcttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAACTCGACTCCTTTATTATAC 665 421 488 Antisense
TTGCTTATTCCCTACTATGCTGCAT 675 701 517 Antisense
ATCCGTGCCCGACACGAGAGTTCTT 354 37 605 Antisense
GTTCTTCATACTTCCGGTGTTTATA 558 443 624 Antisense
GGTGGATCTGAAAGCCTCTATATAC 254 499 661 Antisense
CACGTGATTTGTCTGGTTTACTACC 21 95 733 Antisense
TTTACGTAGTCCCACCTAGAACACT 624 443 758 Antisense
TCAGTCCCGCTGATGCTTATAATTG 682 623 841 Antisense
TTGTTCCTGGTATGGCGGTAGTCCT 701 687 863 Antisense
GTAGTCCTTCCATTGTTGGCTGGAT 129 457 880 Antisense
CTGGCAGTGAACGTCATGGCTTTTC 154 241 928 Antisense
Sequence Source Affymetrix Proprietary Database