[Home] | [Total List]

[189035_at] 7TM receptor

Description C33A12.10 /REP_DB=WormBase Gene ID /WP=CE05356 /TR=Q18364 /GB=CAA92793.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 11      4grp_total > 07      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.3
(-3)
A 		5.6
(3)
A 		5.3
(2.6)
A 		2.5
(-1.3)
A 		4
B 15.2
(3)
A 		1.7
(-3)
A 		7.2
(-0.6)
A 		4.8
(-1.6)
A 		14
C 1.8
(-3)
A 		2.3
(-2.4)
A 		1.8
(-3)
A 		6.7
(3)
A 		5
avr 6.1
(3) 		3.2
(-3) 		4.8
(0.3) 		4.7
(0.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.2
(-2.1)
A 		11.1
(3)
A 		3.2
(-2.1)
A 		1.8
(-3)
A 		3.4
(-2)
A 		1.8
(-3)
A 		9
B 3.1
(-1.1)
A 		4.1
(-0.1)
A 		4.7
(0.6)
A 		6.9
(3)
A 		4.6
(0.5)
A 		1.4
(-3)
A 		6
C 4.9
(2.1)
A 		5.1
(2.4)
A 		5.5
(3)
A 		2.1
(-2.2)
A 		1.6
(-3)
A 		3.3
(-0.4)
A 		4
avr 3.7
(-1) 		6.8
(3) 		4.5
(0) 		3.6
(-1.2) 		3.2
(-1.7) 		2.2
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.5
(-2.4)
A 		1.2
(1.8)
A 		1.4
(3)
A 		0.4
(-3)
A 		1
B 4.9
(3)
A 		0.4
(-3)
A 		1.7
(-1.3)
A 		1
(-2.2)
A 		5
C 0.6
(-3)
A 		0.7
(-1.8)
A 		0.6
(-3)
A 		1.1
(3)
A 		1
avr 2
(3) 		0.8
(-3) 		1.2
(-1) 		0.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.6
(-2.7)
A 		3.9
(3)
A 		0.7
(-2.5)
A 		0.5
(-2.8)
A 		1
(-2)
A 		0.4
(-3)
A 		4
B 1.1
(-0.4)
A 		1.4
(0.9)
A 		1.2
(-0)
A 		1.8
(2.6)
A 		1.9
(3)
A 		0.5
(-3)
A 		1
C 1.8
(3)
A 		1.6
(2.1)
A 		1.4
(1.3)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		1.1
(0)
A 		1
avr 1.2
(-1.1) 		2.3
(3) 		1.1
(-1.5) 		0.9
(-2.3) 		1.1
(-1.5) 		0.7
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189035_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9076
Sequence Type Exemplar sequence
Representative Public ID C33A12.10 NCBI
Target Description C33A12.10 /REP_DB=WormBase Gene ID /WP=CE05356 /TR=Q18364 /GB=CAA92793.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069278(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069278 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-4) (sru-4) mRNA, complete cds. 11/11 None
GENEFINDER00000009037 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9494009:9499597:1 9/11 None
C33A12.10 ENSEMBL cdna:known chromosome:CEL140:IV:9498365:9499565:1 gene:C33A12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9498370-9499571(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol sru-4
Ensembl C33A12.10
Entrez Gene 183143 Entrez gene
SwissProt Q18364 EMBL-EBI
WormBase CE05356 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92793 Hypothetical protein C33A12.10 [Caenorhabditis elegans] ref|NP_501679.1| Serpentine Receptor, class U family member (sru-4) [Caenorhabditis elegans] 0.0
blast CAE74032 Hypothetical protein CBG21682 [Caenorhabditis briggsae] 1.0E-130
blast CAA92795 Hypothetical protein C33A12.11 [Caenorhabditis elegans] ref|NP_501678.1| Serpentine Receptor, class U family member (sru-3) [Caenorhabditis elegans] 1.0E-101
blast CAA92793 Hypothetical protein C33A12.10 [Caenorhabditis elegans] ref|NP_501679.1| Serpentine Receptor, class U family member (sru-4) [Caenorhabditis elegans] 1.0E-79
blast T19664 hypothetical protein C33A12.9b - Caenorhabditis elegans 4.0E-72
blast CAE74032 Hypothetical protein CBG21682 [Caenorhabditis briggsae] 3.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.3E-67
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 2.1E-30
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 9.5E-29
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 9.8E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501679.1 6 29-51,71-93,116-138,159-181,209-231,263-285
C33A12.10 6 29-51,71-93,116-138,159-181,209-231,263-285
GENEFINDER00000009037 12 20-39,46-68,96-118,139-161,187-209,228-250,254-276,283-302,307-325,332-354,382-404,432-454
Sequence
Target Sequence 
>C. ELEGANS:189035_AT
gattccaattattctatgctttcctttatgcttcactttttattttattccagccctggg
agtatgcaaacaatttgcaactccatatccatttggatcggtttggatttactacataaa
atctgcttttgggcttagaaactcattttttcatttatataatatagtattttggatgat
tgcttctattatagctaatggtttactattttttaaagttgctcaagctagagcgaaatt
gataagtgcacaaagtggagcatcaaagaaaactcatacatctataacaatgactacgct
tgcaatgataatattttatctgacaaacggtgcatttttgctagtttacatcttctctta
cggaacaagtgtgtatatttcttattccgaaatcattaggtcattcggaaatgatttaca
attttgtgtggtcacgtgggcattttatttgacacatccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCAATTATTCTATGCTTTCCT 44 435 492 Antisense
TATGCTTTCCTTTATGCTTCACTTT 210 657 506 Antisense
ATTCCAGCCCTGGGAGTATGCAAAC 235 7 538 Antisense
ACAATTTGCAACTCCATATCCATTT 212 115 561 Antisense
ATCTGCTTTTGGGCTTAGAAACTCA 553 31 612 Antisense
GTATTTTGGATGATTGCTTCTATTA 563 453 658 Antisense
AACAATGACTACGCTTGCAATGATA 316 135 777 Antisense
GACAAACGGTGCATTTTTGCTAGTT 433 363 813 Antisense
TGCTAGTTTACATCTTCTCTTACGG 438 579 830 Antisense
TTGTGTGGTCACGTGGGCATTTTAT 251 707 915 Antisense
GGGCATTTTATTTGACACATCCATC 48 493 929 Antisense
Sequence Source Affymetrix Proprietary Database