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[189034_at] protein kinase

Description B0198.3 /REP_DB=WormBase Gene ID /WP=CE02931 /TR=Q17443 /GB=CAA91529.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 13      4grp_total > 44      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 312.4
(3)
P 		311.8
(3)
P 		150.7
(-2.1)
A 		122.7
(-3)
A 		190
B 332.6
(2.5)
P 		357.1
(3)
M 		163.3
(-1.3)
A 		85.2
(-3)
A 		272
C 254.5
(0.5)
P 		322
(3)
A 		226.3
(-0.5)
A 		156.8
(-3)
M 		165
avr 299.8
(2.1) 		330.3
(3) 		180.1
(-1.3) 		121.6
(-3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 304.1
(3)
A 		274.4
(2)
P 		208.8
(-0.1)
P 		227.9
(0.5)
A 		127.2
(-2.7)
A 		119.1
(-3)
A 		185
B 283.1
(2.3)
P 		301.9
(3)
P 		242.1
(0.9)
P 		197.2
(-0.7)
P 		168
(-1.8)
A 		134.1
(-3)
M 		168
C 268.8
(1.8)
P 		301.4
(3)
P 		252.5
(1.2)
A 		152.2
(-2.5)
A 		233.5
(0.5)
A 		137.2
(-3)
A 		164
avr 285.3
(2.7) 		292.6
(3) 		234.5
(0.9) 		192.4
(-0.7) 		176.2
(-1.3) 		130.1
(-3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 113.8
(3)
P 		67.7
(0.1)
P 		39.4
(-1.7)
A 		18
(-3)
A 		96
B 106.1
(3)
P 		88.2
(1.8)
M 		37.8
(-1.7)
A 		18.2
(-3)
A 		88
C 84.2
(2.2)
P 		92.6
(3)
A 		78.9
(1.8)
A 		26.4
(-3)
M 		66
avr 101.4
(3) 		82.8
(1.6) 		52
(-0.7) 		20.9
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 56.1
(-0.6)
A 		97.6
(3)
P 		45.5
(-1.6)
P 		57.8
(-0.5)
A 		38.4
(-2.2)
A 		29
(-3)
A 		69
B 98.5
(2.8)
P 		100.5
(3)
P 		58.8
(-2)
P 		52.2
(-2.7)
P 		68.3
(-0.8)
A 		50
(-3)
M 		51
C 99.6
(3)
P 		92
(2.3)
P 		64.3
(-0.1)
A 		30.6
(-3)
A 		75.6
(0.9)
A 		45.9
(-1.7)
A 		69
avr 84.7
(1.7) 		96.7
(3) 		56.2
(-1.4) 		46.9
(-2.4) 		60.8
(-0.9) 		41.6
(-3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189034_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16437
Sequence Type Exemplar sequence
Representative Public ID B0198.3 NCBI
Target Description B0198.3 /REP_DB=WormBase Gene ID /WP=CE02931 /TR=Q17443 /GB=CAA91529.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077614 NCBI Caenorhabditis elegans B0198.3 (B0198.3) mRNA, complete cds. 11/11 None
SNAP00000037173 ENSEMBL cdna:SNAP chromosome:CEL140:X:12042880:12046709:-1 11/11 None
GENEFINDER00000037177 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12042880:12049266:-1 11/11 None
B0198.3 ENSEMBL cdna:known chromosome:CEL140:X:12042537:12049249:-1 gene:B0198.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12042879-12049249(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl B0198.3
Entrez Gene 181830 Entrez gene
SwissProt Q17443 EMBL-EBI
WormBase CE37308 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91529 Hypothetical protein B0198.3 [Caenorhabditis elegans] ref|NP_510015.2| B0198.3 [Caenorhabditis elegans] 0.0
blast CAE69868 Hypothetical protein CBG16200 [Caenorhabditis briggsae] 0.0
blast CAA91758 Hypothetical protein F54F7.5 [Caenorhabditis elegans] ref|NP_741906.1| Maternal Effect Sterile family member (mes-1) [Caenorhabditis elegans] gb|AAF13716.1| MES-1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.0070
Pfam IPR000719 EMBL-EBI Protein kinase 0.0070
Pfam IPR000719 EMBL-EBI Protein kinase 0.0070
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510015.2 1 497-519
B0198.3 1 497-519
SNAP00000037173 1 307-329
GENEFINDER00000037177 1 503-525
Sequence
Target Sequence 
>C. ELEGANS:189034_AT
gaccctgctcagcactttggaagggtttcaattcgattcagtcagtttgcggaacaaatt
tcttcagctcttgagcaccttcactgtgctggaattgtccataccagagtgactaccatt
agtgtgtaccttcttcgcgaatacactgatccactcgacatgctttgtgatcaaatggtc
aagcttggggactttggaaattctgctcgtagtgcagatgacgtcatcatcgatcagaat
ctgcaacctccagaagttgctctcggaaagaagtatgaggcgaaaggagatatttggcag
tttggaacctgccttgcagagatgtgcagcttaggtgtgccgtaccaggcgcagaagcaa
attcctgcatctggtctcgatgagttcgacaagctcccttcgacatgtgtgctccaagac
gctgccaaaaagtgtctcaatgccagaaatcgtccatctgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCTGCTCAGCACTTTGGAAGGG 678 381 2545 Antisense
TTCAGCTCTTGAGCACCTTCACTGT 558 687 2607 Antisense
TACCATTAGTGTGTACCTTCTTCGC 599 649 2658 Antisense
CTTCTTCGCGAATACACTGATCCAC 599 221 2674 Antisense
ACTGATCCACTCGACATGCTTTGTG 708 97 2689 Antisense
AACCTCCAGAAGTTGCTCTCGGAAA 367 147 2789 Antisense
TGTGCAGCTTAGGTGTGCCGTACCA 257 557 2867 Antisense
GAAGCAAATTCCTGCATCTGGTCTC 522 341 2898 Antisense
TCGATGAGTTCGACAAGCTCCCTTC 154 603 2921 Antisense
TTCGACATGTGTGCTCCAAGACGCT 603 695 2943 Antisense
ATGCCAGAAATCGTCCATCTGCTTC 290 41 2984 Antisense
Sequence Source Affymetrix Proprietary Database