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[189032_at] opoid receptor

Description C51E3.2 /REP_DB=WormBase Gene ID /WP=CE08935 /TR=Q18766 /GB=CAB01636.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=opoid receptor
Cluster 6grp_total > 92      4grp_total > 45      6grp_cgc > 97      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 77.1
(3)
P 		57.6
(0.4)
A 		53.5
(-0.2)
A 		32.8
(-3)
A 		44
B 84.1
(3)
P 		45
(0.1)
A 		15.6
(-2.1)
A 		4
(-3)
A 		80
C 86.1
(3)
A 		56
(0.5)
A 		12.6
(-3)
A 		58.2
(0.7)
A 		74
avr 82.4
(3) 		52.9
(-0.2) 		27.2
(-3) 		31.7
(-2.5) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 41.6
(-0.5)
A 		11.9
(-2.8)
A 		9.8
(-3)
A 		28.9
(-1.5)
A 		86.4
(3)
A 		25.7
(-1.8)
A 		77
B 37.7
(-0.6)
A 		36.8
(-0.7)
A 		47.3
(0.5)
A 		62.4
(2.3)
A 		68.6
(3)
A 		17
(-3)
A 		52
C 51.5
(2.7)
A 		37.7
(0.2)
A 		40.9
(0.8)
A 		53
(3)
A 		20
(-3)
A 		42.3
(1.1)
A 		33
avr 43.6
(0.1) 		28.8
(-2.9) 		32.7
(-2.1) 		48.1
(1) 		58.3
(3) 		28.3
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 28.1
(3)
P 		12.5
(-1)
A 		14
(-0.6)
A 		4.8
(-3)
A 		23
B 26.8
(3)
P 		11.1
(-0.6)
A 		3.6
(-2.4)
A 		0.9
(-3)
A 		26
C 28.5
(3)
A 		16.1
(-0.1)
A 		4.4
(-3)
A 		9.8
(-1.7)
A 		24
avr 27.8
(3) 		13.2
(-0.9) 		7.3
(-2.4) 		5.2
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 7.7
(-1.6)
A 		4.2
(-2.5)
A 		2.1
(-3)
A 		7.3
(-1.7)
A 		26.1
(3)
A 		6.3
(-2)
A 		24
B 13.1
(-1.1)
A 		12.2
(-1.4)
A 		11.5
(-1.6)
A 		16.5
(-0.2)
A 		27.9
(3)
A 		6.3
(-3)
A 		22
C 19.1
(3)
A 		11.5
(-0.6)
A 		10.4
(-1.1)
A 		10.7
(-1)
A 		6.5
(-3)
A 		14.1
(0.6)
A 		13
avr 13.3
(-0.4) 		9.3
(-2.4) 		8
(-3) 		11.5
(-1.3) 		20.2
(3) 		8.9
(-2.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12017
Sequence Type Exemplar sequence
Representative Public ID C51E3.2 NCBI
Target Description C51E3.2 /REP_DB=WormBase Gene ID /WP=CE08935 /TR=Q18766 /GB=CAB01636.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=opoid receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073208(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073208 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-27) (srsx-27) mRNA, complete cds. 11/11 None
SNAP00000031199 ENSEMBL cdna:SNAP chromosome:CEL140:V:10153311:10154740:1 11/11 None
GENEFINDER00000031207 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10146920:10154740:1 11/11 None
C51E3.2 ENSEMBL cdna:known chromosome:CEL140:V:10153311:10154740:1 gene:C51E3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10153310-10154740(+) 100.0 100.0
Public Domain and Genome References
Gene Title opoid receptor
Gene Symbol srsx-27
Ensembl C51E3.2
Entrez Gene 183704 Entrez gene
SwissProt Q18766 EMBL-EBI
WormBase CE33986 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01638 Hypothetical protein C51E3.1 [Caenorhabditis elegans] ref|NP_505608.2| Serpentine Receptor, class SX family member (srsx-26) [Caenorhabditis elegans] 1.0E-177
blast CAB01636 Hypothetical protein C51E3.2 [Caenorhabditis elegans] ref|NP_505609.2| Serpentine Receptor, class SX family member (srsx-27) [Caenorhabditis elegans] 1.0E-160
blast CAB01636 Hypothetical protein C51E3.2 [Caenorhabditis elegans] ref|NP_505609.2| Serpentine Receptor, class SX family member (srsx-27) [Caenorhabditis elegans] 1.0E-133
blast CAE64742 Hypothetical protein CBG09530 [Caenorhabditis briggsae] 1.0E-127
blast CAD44102 Hypothetical protein C51E3.9 [Caenorhabditis elegans] ref|NP_741613.1| C51E3.9 [Caenorhabditis elegans] 1.0E-125
blast CAB01640 Hypothetical protein C51E3.3 [Caenorhabditis elegans] ref|NP_505610.2| Serpentine Receptor, class SX family member (srsx-28) [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.0E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505609.2 7 10-32,44-66,81-103,124-146,172-194,206-228,243-265
C51E3.2 7 10-32,44-66,81-103,124-146,172-194,206-228,243-265
SNAP00000031199 7 10-32,44-66,81-103,124-146,172-194,206-228,243-265
GENEFINDER00000031207 14 286-305,315-337,350-372,387-409,429-451,475-497,510-532,547-569,624-646,661-683,704-726,736-752,764-786,801-823
Sequence
Target Sequence 
>C. ELEGANS:189032_AT
gtacttggtcaattggcgtttcctttattatacagcgtgtttttcttggtgtatgggttc
attgttcgagatacaaatgttaaaaatgctgttatctatgttgctgtagtgcttgtatac
tccgctgtttacctcatgttaaaatccaacaaagccagtgctagattcaaaaatgtcttc
cgatcgatattggttaccgttggatttgtactactgggttgggtgaccactacaacagct
aacactttagcgtttgttgttacgagtgacctttttacgattcaactcattcaaatgtat
gctggaattactgtcaattttgctgccgcgtctaatgtttttgtgttttatgcaatcaat
tccgagtaccgatccgtgataaaaacaatgttcggaataagcttgaaaggtgtaatgatc
ttcgaaccatcaagtacccaaacagttacaaaagttgccccagctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTTGGTCAATTGGCGTTTCCTT 384 459 388 Antisense
GGCGTTTCCTTTATTATACAGCGTG 341 541 402 Antisense
TGCTGTAGTGCTTGTATACTCCGCT 90 581 489 Antisense
CTCCGCTGTTTACCTCATGTTAAAA 646 233 507 Antisense
GTCTTCCGATCGATATTGGTTACCG 480 465 562 Antisense
TGGGTGACCACTACAACAGCTAACA 704 551 607 Antisense
GACCTTTTTACGATTCAACTCATTC 561 383 655 Antisense
TTTTGCTGCCGCGTCTAATGTTTTT 51 679 705 Antisense
ATCAATTCCGAGTACCGATCCGTGA 505 23 742 Antisense
GATCTTCGAACCATCAAGTACCCAA 253 403 804 Antisense
CAGTTACAAAAGTTGCCCCAGCTCG 317 197 830 Antisense
Sequence Source Affymetrix Proprietary Database