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[189030_at]

Description T04A11.10 /REP_DB=WormBase Gene ID /WP=CE13138 /TR=O18021 /GB=CAB05613.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 18      4grp_total > 26      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 36.9
(-1)
A 		58.3
(0.6)
P 		9
(-3)
A 		90.8
(3)
A 		82
B 58.1
(-3)
A 		75
(0.3)
P 		88.8
(3)
A 		69.9
(-0.7)
A 		31
C 34.8
(-3)
P 		62.8
(-0.5)
A 		58.6
(-0.9)
M 		103
(3)
P 		68
avr 43.3
(-3) 		65.4
(-0) 		52.1
(-1.8) 		87.9
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 57.7
(1.6)
A 		35.7
(-2.1)
A 		66.1
(3)
A 		38.6
(-1.6)
A 		49.8
(0.3)
P 		30.2
(-3)
A 		36
B 48.4
(3)
A 		27.3
(-0.1)
A 		21.7
(-0.9)
A 		13.9
(-2)
A 		7.4
(-3)
A 		40.9
(1.9)
A 		41
C 74.4
(3)
M 		59.8
(1.3)
A 		21.6
(-3)
A 		51.1
(0.4)
A 		56.5
(1)
P 		37.9
(-1.1)
A 		53
avr 60.2
(3) 		40.9
(-1.5) 		36.5
(-2.5) 		34.5
(-3) 		37.9
(-2.2) 		36.3
(-2.6) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13.4
(3)
A 		12.7
(2.6)
P 		2.3
(-3)
A 		13.3
(2.9)
A 		11
B 18.5
(0.8)
A 		18.5
(0.8)
P 		20.6
(3)
A 		14.9
(-3)
A 		6
C 11.5
(-3)
P 		18.1
(1.4)
A 		20.4
(3)
M 		17.4
(1)
P 		9
avr 14.5
(-2.7) 		16.4
(3) 		14.4
(-3) 		15.2
(-0.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 10.6
(-0.5)
A 		12.7
(1.2)
A 		14.4
(2.5)
A 		9.8
(-1.1)
A 		15
(3)
P 		7.4
(-3)
A 		8
B 16.8
(3)
A 		9.1
(-0.3)
A 		5.3
(-2)
A 		3.7
(-2.7)
A 		3
(-3)
A 		15.2
(2.3)
A 		14
C 27.6
(3)
M 		18.2
(0.4)
A 		5.5
(-3)
A 		10.3
(-1.7)
A 		18.3
(0.5)
P 		12.7
(-1)
A 		22
avr 18.3
(3) 		13.3
(0.1) 		8.4
(-2.7) 		7.9
(-3) 		12.1
(-0.6) 		11.8
(-0.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9599
Sequence Type Exemplar sequence
Representative Public ID T04A11.10 NCBI
Target Description T04A11.10 /REP_DB=WormBase Gene ID /WP=CE13138 /TR=O18021 /GB=CAB05613.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069993, NM_070215
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000015165 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12505668:12509386:1 None
GENEFINDER00000015174 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12498509:12509982:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12505673-12507676(+) 97.93 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05613 Hypothetical protein T04A11.10 [Caenorhabditis elegans] ref|NP_502394.2| Serpentine Receptor, class U family member (sru-17) [Caenorhabditis elegans] 1.0E-179
blast CAA16355 Hypothetical protein Y45F10B.4 [Caenorhabditis elegans] ref|NP_502616.2| Serpentine Receptor, class U family member (sru-16) [Caenorhabditis elegans] 1.0E-173
blast CAB05613 Hypothetical protein T04A11.10 [Caenorhabditis elegans] ref|NP_502394.2| Serpentine Receptor, class U family member (sru-17) [Caenorhabditis elegans] 1.0E-143
blast CAA16355 Hypothetical protein Y45F10B.4 [Caenorhabditis elegans] ref|NP_502616.2| Serpentine Receptor, class U family member (sru-16) [Caenorhabditis elegans] 1.0E-137
blast CAB05611 Hypothetical protein T04A11.8 [Caenorhabditis elegans] ref|NP_502392.1| Serpentine Receptor, class U family member (sru-19) [Caenorhabditis elegans] 1.0E-132
blast CAB05610 Hypothetical protein T04A11.7a [Caenorhabditis elegans] ref|NP_001023354.1| Serpentine Receptor, class U family member (sru-20) [Caenorhabditis elegans] 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.5E-35
Pfam IPR006096 EMBL-EBI Glu/Leu/Phe/Val dehydrogenase, C terminal 5.8E-8
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 2.2E-49
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 3.5E-65
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 3.9E-93
Pfam IPR006096 EMBL-EBI Glu/Leu/Phe/Val dehydrogenase, C terminal 5.8E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000015165 5 24-46,68-90,110-132,152-174,204-226
GENEFINDER00000015174 16 24-46,67-89,117-139,160-178,183-202,250-272,292-310,323-345,375-394,424-446,499-521,542-564,588-610,631-653,711-733,760-782
Sequence
Target Sequence 
>C. ELEGANS:189030_AT
ggaggacaggaataagcgtatcacaggaaagccaattgtcagtggaggaattcacgaacg
tgcttccgccaccggacgtggagtgtggaagggactcaaggtgttcaccaacgatgctga
ttacacgaagatcgtagaccttgacatcggactcgctggaaagaccgctatcatcgctga
caccttcgccaaattggacagagtaagtaaaaattgtttttggctcgttagtaattttgg
tcgctccgccttgcatcacatgaaagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGACAGGAATAAGCGTATCACA 434 515 1101 Antisense
GGAATTCACGAACGTGCTTCCGCCA 635 533 1147 Antisense
GATGCTGATTACACGAAGATCGTAG 328 413 1213 Antisense
CGAAGATCGTAGACCTTGACATCGG 175 253 1226 Antisense
TCGTAGACCTTGACATCGGACTCGC 692 603 1232 Antisense
GCTGGAAAGACCGCTATCATCGCTG 231 295 1255 Antisense
TGGAAAGACCGCTATCATCGCTGAC 606 547 1257 Antisense
CTGACACCTTCGCCAAATTGGACAG 398 237 1277 Antisense
TGTTTTTGGCTCGTTAGTAATTTTG 595 559 1315 Antisense
TCGTTAGTAATTTTGGTCGCTCCGC 616 603 1325 Antisense
CTCCGCCTTGCATCACATGAAAGTA 98 235 1344 Antisense
Sequence Source Affymetrix Proprietary Database