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[189028_s_at] chimaerin like

Description F12F6.5 /REP_DB=WormBase Gene ID /WP=CE20680 /TR=Q19370 /GB=CAA97790.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=chimaerin like
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 62      4grp_high_8_8 > 19      6grp_highest_nonorm > 97      6grp_total > 67      4grp_total > 29      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 344
1 2 3 4 range
A 760.6
(-0.2)
P 		762.9
(-0.1)
P 		707.8
(-3)
P 		820.8
(3)
P 		113
B 964.6
(3)
P 		801.4
(0.2)
P 		620.3
(-3)
P 		894.7
(1.8)
P 		344
C 851
(2.8)
P 		730.5
(-2.1)
P 		709
(-3)
P 		854.9
(3)
P 		146
avr 858.7
(3) 		764.9
(-0.1) 		679
(-3) 		856.8
(2.9) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 852
1 2 3 4 5 6 range
A 800.5
(-2.3)
P 		981.2
(-1)
P 		694.3
(-3)
P 		916
(-1.4)
P 		915.8
(-1.4)
P 		1546.2
(3)
P 		852
B 784.6
(-2.6)
P 		863.9
(-1.7)
P 		750.3
(-3)
P 		780.3
(-2.6)
P 		803.1
(-2.4)
P 		1258.3
(3)
P 		508
C 874.5
(-2.7)
P 		908.7
(-2.4)
P 		848
(-3)
P 		973.4
(-1.7)
P 		892.9
(-2.6)
P 		1447.1
(3)
P 		599
avr 819.9
(-2.5) 		917.9
(-1.6) 		764.2
(-3) 		889.9
(-1.8) 		870.6
(-2) 		1417.2
(3) 		653
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 276.9
(3)
P 		165.6
(-1.3)
P 		185
(-0.5)
P 		120.2
(-3)
P 		157
B 307.6
(3)
P 		197.9
(-1)
P 		143.7
(-3)
P 		190.7
(-1.3)
P 		164
C 281.7
(3)
P 		210
(-0.1)
P 		247.1
(1.5)
P 		144.1
(-3)
P 		138
avr 288.7
(3) 		191.2
(-1.3) 		191.9
(-1.2) 		151.7
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 147.6
(-3)
P 		349
(2.3)
P 		151.2
(-2.9)
P 		232.3
(-0.8)
P 		276.3
(0.4)
P 		376.4
(3)
P 		229
B 273
(-1.1)
P 		287.6
(-0.8)
P 		182.2
(-3)
P 		206.7
(-2.5)
P 		326.3
(0)
P 		469.2
(3)
P 		287
C 324.1
(-0.3)
P 		277.3
(-1.3)
P 		215.8
(-2.6)
P 		195.8
(-3)
P 		288.9
(-1.1)
P 		484.4
(3)
P 		289
avr 248.2
(-1.5) 		304.6
(-0.2) 		183.1
(-3) 		211.6
(-2.3) 		297.2
(-0.4) 		443.3
(3) 		260
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189028_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10309
Sequence Type Exemplar sequence
Representative Public ID F12F6.5 NCBI
Target Description F12F6.5 /REP_DB=WormBase Gene ID /WP=CE20680 /TR=Q19370 /GB=CAA97790.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=chimaerin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069778 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-13) (tag-13) mRNA, complete cds. 11/11 None
SNAP00000024855 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11574599:11578328:1 11/11 None
GENEFINDER00000024863 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11570513:11578328:1 11/11 None
F12F6.5 ENSEMBL cdna:known chromosome:CEL140:IV:11570482:11578669:1 gene:F12F6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11570518-11578334(+) 100.0 100.0
Public Domain and Genome References
Gene Title chimaerin like
Gene Symbol tag-13
Ensembl F12F6.5
Entrez Gene 178079 Entrez gene
SwissProt Q19370 EMBL-EBI
WormBase CE20680 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.1468.1.S1_S_AT similar to SLIT-ROBO Rho GTPase-activating protein 1 cfa
CANINE_2:CFAAFFX.1476.1.S1_AT similar to SLIT-ROBO Rho GTPase-activating protein 1 cfa
CHICKEN:GGA.12764.1.S1_S_AT similar to SLIT-ROBO Rho GTPase-activating protein 1 gga
CHICKEN:GGAAFFX.23050.1.S1_S_AT similar to SLIT-ROBO Rho GTPase-activating protein 1 gga
HU35KSUBB:RC_F03989_AT SLIT-ROBO Rho GTPase activating protein 1 hs
HU35KSUBD:RC_H63725_AT SLIT-ROBO Rho GTPase activating protein 1 hs
U133_X3P:HS2.400041.1.S1_3P_S_AT SLIT-ROBO Rho GTPase activating protein 1 hs
U133_X3P:HS2.374691.1.S1_3P_X_AT SLIT-ROBO Rho GTPase activating protein 1 hs
U133_X3P:HS2.374691.1.S1_3P_AT SLIT-ROBO Rho GTPase activating protein 1 hs
U133_X3P:HS.18995.1.S1_3P_A_AT SLIT-ROBO Rho GTPase activating protein 1 hs
HG-U133_PLUS_2:1554473_AT SLIT-ROBO Rho GTPase activating protein 1 hs
HG-U133_PLUS_2:1569269_S_AT SLIT-ROBO Rho GTPase activating protein 1 hs
HG-U133_PLUS_2:233888_S_AT SLIT-ROBO Rho GTPase activating protein 1 hs
HG-U133B:233888_S_AT SLIT-ROBO Rho GTPase activating protein 1 hs
HG-U95B:42669_AT SLIT-ROBO Rho GTPase activating protein 1 hs
HG-U95C:62780_AT SLIT-ROBO Rho GTPase activating protein 1 hs
MOUSE430_2:1431719_A_AT SLIT-ROBO Rho GTPase activating protein 1 mm
MOUSE430A_2:1431719_A_AT SLIT-ROBO Rho GTPase activating protein 1 mm
MOE430A:1431719_A_AT SLIT-ROBO Rho GTPase activating protein 1 mm
MU19KSUBA:TC15982_AT PREDICTED: SLIT-ROBO Rho GTPase activating protein 1 [Mus musculus], mRNA sequence mm
MU19KSUBC:TC35623_AT PREDICTED: SLIT-ROBO Rho GTPase activating protein 1 [Mus musculus], mRNA sequence mm
RAE230B:1391633_AT Similar to SLIT-ROBO Rho GTPase-activating protein 1 rn
RAT230_2:1391633_AT Similar to SLIT-ROBO Rho GTPase-activating protein 1 rn
RG-U34C:RC_AI070705_AT Similar to SLIT-ROBO Rho GTPase-activating protein 1 rn
Protein Similarities
Method ID Description E-Value
blast CAA97790 Hypothetical protein F12F6.5 [Caenorhabditis elegans] ref|NP_502179.1| Temporarily Assigned Gene name family member (tag-13) [Caenorhabditis elegans] 0.0
blast CAE62098 Hypothetical protein CBG06126 [Caenorhabditis briggsae] 0.0
blast XP_624066 PREDICTED: similar to ENSANGP00000003425 [Apis mellifera] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR001060 EMBL-EBI Cdc15/Fes/CIP4 2.1E-28
Pfam IPR000198 EMBL-EBI RhoGAP domain 3.2E-61
Pfam IPR001060 EMBL-EBI Cdc15/Fes/CIP4 1.6E-24
Pfam IPR000198 EMBL-EBI RhoGAP domain 3.2E-61
Sequence
Target Sequence 
>C. ELEGANS:189028_S_AT
ggcatttctgttctaagacattcccatgttgaaccgagttggaccgacaatcgggagcat
cttaacatgcgatcaatgagtacggatccagatgaggaacgagaatatgtgtctccacca
cctccacttctttctactaaatacgtgtctgcagcatcttgctcaattagtccggcaccc
agaacaattgacataaaagaacgaaaagattctcgtgatttgttgtatgctccgatcacc
cgagcaaccactgttcctgcaaacagtggaagtaatacggaaatgaattcgactggtgtc
cgaccgattgggaagtcttcactgagagatcagcttcagttgatgagaaaggagaatagt
actgaaatgaaaccatccacatctctcaatggctcaacaaagaagcttgattctgaaact
acgatcctcgacgccaggagtacagataaaagcacagaatcttcaagaagaacaagcttg
gaagatgataaaagcccagaaccgttcgctcaacctgacatcatcaattcggcacgacca
cgtggcaaatctccaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATTTCTGTTCTAAGACATTCCC 22 535 2584 Antisense
GACATTCCCATGTTGAACCGAGTTG 521 369 2600 Antisense
ACGAGAATATGTGTCTCCACCACCT 358 93 2682 Antisense
CCTCCACTTCTTTCTACTAAATACG 380 267 2704 Antisense
AATACGTGTCTGCAGCATCTTGCTC 268 173 2723 Antisense
TCAATTAGTCCGGCACCCAGAACAA 649 631 2746 Antisense
ATGAATTCGACTGGTGTCCGACCGA 338 43 2866 Antisense
GTCCGACCGATTGGGAAGTCTTCAC 282 475 2881 Antisense
TACGATCCTCGACGCCAGGAGTACA 639 647 3003 Antisense
TGACATCATCAATTCGGCACGACCA 683 569 3099 Antisense
CGACCACGTGGCAAATCTCCAACTC 549 251 3118 Antisense
Sequence Source Affymetrix Proprietary Database