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[189026_s_at]

Description F32A7.5 /REP_DB=WormBase Gene ID /WP=CE09846 /TR=P91859 /GB=CAB05498.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=claustrin like
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 21      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 32      6grp_total > 32      4grp_total > 51      6grp_highest_sub > De      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 858
1 2 3 4 range
A 741.8
(-0.9)
P 		1222.7
(3)
P 		948.6
(0.8)
P 		483
(-3)
P 		740
B 748.6
(0.9)
P 		844.8
(2.2)
P 		899.2
(3)
P 		465.3
(-3)
P 		434
C 659.2
(-0.6)
P 		1086.2
(3)
P 		938.9
(1.8)
P 		365.2
(-3)
P 		721
avr 716.5
(-0.3) 		1051.2
(3) 		928.9
(1.8) 		437.8
(-3) 		613

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1112
1 2 3 4 5 6 range
A 1381.6
(3)
P 		1107.8
(0.3)
P 		1174.4
(1)
P 		907.6
(-1.7)
P 		961.5
(-1.2)
P 		774.4
(-3)
P 		607
B 1029.1
(-0.1)
P 		1134.6
(0.5)
P 		1591.7
(3)
P 		1333.3
(1.6)
P 		834.8
(-1.2)
P 		508.7
(-3)
P 		1083
C 1436.6
(3)
P 		1171.9
(1.3)
P 		1293.9
(2.1)
P 		919
(-0.2)
P 		943.1
(-0.1)
P 		479.6
(-3)
P 		957
avr 1282.4
(2.4) 		1138.1
(1.3) 		1353.3
(3) 		1053.3
(0.6) 		913.1
(-0.4) 		587.6
(-3) 		766
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 270.1
(3)
P 		265.4
(2.9)
P 		248
(2.3)
P 		70.7
(-3)
P 		199
B 238.7
(3)
P 		208.6
(1.7)
P 		208.4
(1.7)
P 		99.2
(-3)
P 		140
C 218.2
(0.5)
P 		312.3
(2.7)
P 		327.2
(3)
P 		61.6
(-3)
P 		266
avr 242.3
(2.4) 		262.1
(3) 		261.2
(3) 		77.2
(-3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 372
1 2 3 4 5 6 range
A 254.7
(-1.1)
P 		394
(3)
P 		255.8
(-1)
P 		230.2
(-1.8)
P 		290.1
(-0)
P 		188.5
(-3)
P 		206
B 358.1
(2.1)
P 		377.7
(2.7)
P 		386.5
(3)
P 		353.1
(2)
P 		339.2
(1.6)
P 		189.7
(-3)
P 		197
C 532.5
(3)
P 		357.6
(0.2)
P 		329.3
(-0.3)
P 		184.8
(-2.6)
P 		305.2
(-0.7)
P 		160.6
(-3)
P 		372
avr 381.8
(3) 		376.4
(2.8) 		323.9
(1.3) 		256
(-0.7) 		311.5
(0.9) 		179.6
(-3) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189026_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1514
Sequence Type Exemplar sequence
Representative Public ID F32A7.5 NCBI
Target Description F32A7.5 /REP_DB=WormBase Gene ID /WP=CE09846 /TR=P91859 /GB=CAB05498.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=claustrin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026265(11), NM_001026266(11), NM_001026267(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026265 NCBI Caenorhabditis elegans F32A7.5a (F32A7.5) mRNA, complete cds. 11/11 None
NM_001026266 NCBI Caenorhabditis elegans F32A7.5b (F32A7.5) mRNA, complete cds. 11/11 None
NM_001026267 NCBI Caenorhabditis elegans F32A7.5c (F32A7.5) mRNA, complete cds. 11/11 None
SNAP00000011757 ENSEMBL cdna:SNAP chromosome:CEL140:I:14854596:14857978:1 11/11 None
GENEFINDER00000011766 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14854596:14857978:1 11/11 None
F32A7.5c ENSEMBL cdna:known chromosome:CEL140:I:14854596:14858241:1 gene:F32A7.5 11/11 None
F32A7.5a ENSEMBL cdna:known chromosome:CEL140:I:14854596:14858242:1 gene:F32A7.5 11/11 None
F32A7.5b ENSEMBL cdna:known chromosome:CEL140:I:14854596:14858242:1 gene:F32A7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14854526-14857909(+) 100.0 100.0
Public Domain and Genome References
Ensembl F32A7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05498 Hypothetical protein F32A7.5a [Caenorhabditis elegans] ref|NP_001021436.1| F32A7.5a [Caenorhabditis elegans] 0.0
blast CAD92391 Hypothetical protein F32A7.5c [Caenorhabditis elegans] ref|NP_001021438.1| F32A7.5c [Caenorhabditis elegans] 0.0
blast CAB01697 Hypothetical protein F25D7.4 [Caenorhabditis elegans] ref|NP_492724.1| F25D7.4 [Caenorhabditis elegans] 0.0
blast CAD92390 Hypothetical protein F32A7.5b [Caenorhabditis elegans] ref|NP_001021437.1| F32A7.5b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:189026_S_AT
gcaatcgcgctccagtgtgattgagaatggagctgctgtgcagtacgagaagactgatcc
agcattggatgatgtgctcaatgcatgtgctcaggagagtgaaaagatcgatgcttccca
tccagataatcttcacatgccagctgctccaggatccgccgccccagcgaagccagtcaa
gttcgcgcgcccatattatttcgacgtggtgacagtgccaaggaacgagaaattggagac
ctctgttgcagcagacggccttcaagagttcatctcaaaagttcgctccagaaatgtgat
cctcgcgtcgaaggatatctccggagagcagctgcaggcgattctttgcggaaagcaaac
atggtgtgatagtgctcacccatgcaacgtgatcccgacgcattcctctccgatgctact
cgatttccgccaaaagaacgaggaacagtttgccgcgaataatctgcaattttcgattcc
cgtggagaagcaacggaccacagtgagctcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATCGCGCTCCAGTGTGATTGAG 531 321 2091 Antisense
TGCTTCCCATCCAGATAATCTTCAC 512 579 2202 Antisense
CGCGCCCATATTATTTCGACGTGGT 413 239 2276 Antisense
ATTGGAGACCTCTGTTGCAGCAGAC 670 3 2322 Antisense
CAGACGGCCTTCAAGAGTTCATCTC 612 205 2342 Antisense
AGTTCATCTCAAAAGTTCGCTCCAG 61 65 2357 Antisense
AGTTCGCTCCAGAAATGTGATCCTC 197 65 2370 Antisense
GCTGCAGGCGATTCTTTGCGGAAAG 128 297 2421 Antisense
TGCTACTCGATTTCCGCCAAAAGAA 268 579 2504 Antisense
GAACGAGGAACAGTTTGCCGCGAAT 386 347 2526 Antisense
GCAACGGACCACAGTGAGCTCGGAC 660 317 2580 Antisense
Sequence Source Affymetrix Proprietary Database