[Home] | [Total List]

[189025_at]

Description D2063.1 /REP_DB=WormBase Gene ID /WP=CE20628 /TR=Q9UAT1 /GB=AAD14690.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_high_8_8 > 13      6grp_highest_nonorm > 80      6grp_total > 08      4grp_total > 03      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 92.7
(-1.8)
P 		67.8
(-2.6)
P 		53.6
(-3)
P 		245.1
(3)
P 		192
B 71.7
(-2.6)
P 		69.4
(-2.7)
A 		47
(-3)
A 		454.9
(3)
P 		408
C 99.5
(-2.4)
P 		85.2
(-2.7)
P 		64
(-3)
P 		443.2
(3)
P 		379
avr 88
(-2.4) 		74.1
(-2.6) 		54.9
(-3) 		381.1
(3) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 471.8
(3)
P 		196.1
(-1.3)
P 		314.5
(0.5)
P 		198
(-1.3)
P 		87.1
(-3)
P 		117.3
(-2.5)
P 		385
B 486.6
(3)
P 		167.1
(-2.2)
P 		205
(-1.6)
P 		162.9
(-2.2)
P 		140.5
(-2.6)
P 		115.5
(-3)
P 		371
C 473
(3)
P 		160.9
(-1.9)
P 		254
(-0.4)
P 		220.2
(-0.9)
P 		88.2
(-3)
P 		128.7
(-2.4)
P 		385
avr 477.1
(3) 		174.7
(-1.9) 		257.8
(-0.5) 		193.7
(-1.6) 		105.3
(-3) 		120.5
(-2.8) 		372
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 33.8
(2.4)
P 		14.7
(-2.8)
P 		14
(-3)
P 		35.9
(3)
P 		22
B 22.9
(-2.2)
P 		17.2
(-2.6)
A 		10.9
(-3)
A 		96.9
(3)
P 		86
C 32.9
(-1.8)
P 		24.5
(-2.7)
P 		22.3
(-3)
P 		74.7
(3)
P 		52
avr 29.9
(-1.4) 		18.8
(-2.7) 		15.7
(-3) 		69.2
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 87
(3)
P 		69.7
(1.3)
P 		68.5
(1.2)
P 		50.2
(-0.6)
P 		26.3
(-3)
P 		28.6
(-2.8)
P 		61
B 169.3
(3)
P 		55.6
(-2.4)
P 		49.8
(-2.7)
P 		43.2
(-3)
P 		57.1
(-2.3)
P 		43.1
(-3)
P 		126
C 175.3
(3)
P 		49.1
(-2.2)
P 		64.6
(-1.5)
P 		44.3
(-2.4)
P 		28.5
(-3)
P 		43.1
(-2.4)
P 		147
avr 143.9
(3) 		58.1
(-1.8) 		61
(-1.7) 		45.9
(-2.5) 		37.3
(-3) 		38.3
(-2.9) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189025_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14906
Sequence Type Exemplar sequence
Representative Public ID D2063.1 NCBI
Target Description D2063.1 /REP_DB=WormBase Gene ID /WP=CE20628 /TR=Q9UAT1 /GB=AAD14690.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071794
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000042159 ENSEMBL cdna:SNAP chromosome:CEL140:V:4326960:4328550:1 9/11 None
GENEFINDER00000042165 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4326960:4328763:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071794 7/11 Cross Hyb Matching Probes None
D2063.1 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4326959-4328777(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504195 D2063.1 [Caenorhabditis elegans] gb|AAD14690.3| Hypothetical protein D2063.1 [Caenorhabditis elegans] 0.0
blast NP_504195 D2063.1 [Caenorhabditis elegans] gb|AAD14690.3| Hypothetical protein D2063.1 [Caenorhabditis elegans] 1.0E-179
blast CAB04603 Hypothetical protein K12G11.4 [Caenorhabditis elegans] ref|NP_505992.1| SOrbitol DeHydrogenase family member (sodh-2) [Caenorhabditis elegans] sp|O45687|ADH2_CAEEL Probable alcohol dehydrogenase K12G11.4 1.0E-152
blast CAB04603 Hypothetical protein K12G11.4 [Caenorhabditis elegans] ref|NP_505992.1| SOrbitol DeHydrogenase family member (sodh-2) [Caenorhabditis elegans] sp|O45687|ADH2_CAEEL Probable alcohol dehydrogenase K12G11.4 1.0E-148
blast CAE75274 Hypothetical protein CBG23239 [Caenorhabditis briggsae] 1.0E-146
blast CAE75274 Hypothetical protein CBG23239 [Caenorhabditis briggsae] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 2.3E-107
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 4.4E-106
Sequence
Target Sequence 
>C. ELEGANS:189025_AT
tgggctgggatcttttgcaattcaatacgcaagagctatgggaatgcgagttgttgcgat
agatcatccaagtaaagaggctcactgtaagagtcttggagcagaatggtttgttgatgc
atttggaactgaggatattgtggcacacattcgagaaattactgatggtggagcacatgg
tgttgtcaattttgcagctgctaaggtgcccatggagaaggctctagagtacgttagaaa
acgaggaactgtggtgtttgtaggacttgcgaaagactcaaagattctcgtcgacacaat
ccccctgattttcaacgctgtaaaaatcaaaggatcaattgttggatcccgattggatgt
caatgaggctatggattttgtggctcgtggagccgtcaatgtcccattagagttggtgaa
gctggaagacgtcgccgaagtctacacaaaaatgcacgatggaaagataaattctcggca
attattgtcggtttttttaaaccccataatttttttatcgaatgttgttaaacaggaaac
ttttttgggggattttgtaaatttttgtaagttcttcactctttttgtaagttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGCTGGGATCTTTTGCAATTCAA 456 553 612 Antisense
TGCGAGTTGTTGCGATAGATCATCC 370 583 656 Antisense
AGAGGCTCACTGTAAGAGTCTTGGA 705 67 687 Antisense
TTGCAGCTGCTAAGGTGCCCATGGA 238 703 803 Antisense
AACTGTGGTGTTTGTAGGACTTGCG 383 143 858 Antisense
CAAAGATTCTCGTCGACACAATCCC 373 193 890 Antisense
GGCTATGGATTTTGTGGCTCGTGGA 704 537 978 Antisense
GAGCCGTCAATGTCCCATTAGAGTT 42 387 1001 Antisense
GGAAGACGTCGCCGAAGTCTACACA 288 531 1035 Antisense
AATTCTCGGCAATTATTGTCGGTTT 220 177 1081 Antisense
GTTCTTCACTCTTTTTGTAAGTTCT 235 441 1182 Antisense
Sequence Source Affymetrix Proprietary Database